Changes between Version 24 and Version 25 of UvmatHelp
- Timestamp:
- Jun 2, 2013, 10:12:21 AM (11 years ago)
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UvmatHelp
v24 v25 17 17 * '''editxml.fig:''' displays and edits xml files according to an xml schema. xml reading and editing is performed by the toolbox [http://www.artefact.tk/software/matlab/xml/ xmltree] , copied in the subdirectory /@xmltree. 18 18 * '''geometry_calib.fig''': determines geometric calibration parameters for relating image to physical coordinates. The toolbox http://www.vision.caltech.edu/bouguetj/calib_doc/ is used, copied in the subdirectory /toolbox_calib. 19 * '''get_field.fig:''' selects coordinates and field in a general NetCDF file. 19 * '''get_field.fig:''' selects coordinates and field in a general NetCDF file. 20 20 * '''series.fig:''' apply various processing functions to series of fields. These functions are stored in the subdirectory /series. 21 21 * '''set_object.fig:''' creates and edits geometric objects used to project data: points, lines, planes... … … 708 708 709 709 === Other GUIs:(function .m and associated figure .fig) === 710 * 'browse_data';...% function, associated with the GUI 'browse_data.fig' for scanning directories in a project/campaign 710 711 * 'civ';... %function associated with the interface 'civ.fig' for PIV and spline interpolation 711 712 * 'create_grid';...% called by the GUI geometry_calib to create a physical grid … … 717 718 * 'rotate_points';...%'rotate_points': associated with GUI rotate_points.fig to introduce (2D) rotation parameters 718 719 * 'series';...% master function for analysis field series, with interface 'series.fig' 719 * 'set_grid';...% creates a grid for PIV * 'set_object';...% edit a projection object 720 * 'set_grid';...% creates a grid for PIV 721 * 'set_object';...% edit a projection object 720 722 * 'translate_points';...% associated with GUI translate_points.fig to display translation parameters 721 723 * 'view_field';...% function for visualisation of projected fields' … … 723 725 === functions activated by mouse and keybord in GUI : === 724 726 * 'keyboard_callback';... % function activated when a key is pressed on the keyboard 725 * 'mouse_down';% function activated when the mouse button is pressed on a figure (callback for ' WindowButtonDownFcn')726 * 'mouse_motion';...% permanently called by mouse motion over a figure (callback for ' WindowButtonMotionFcn')727 * 'mouse_up';... % function to be activated when the mouse button is released (callback for ' WindowButtonUpFcn')727 * 'mouse_down';% function activated when the mouse button is pressed on a figure (callback for '[wiki:WindowButtonDownFcn !WindowButtonDownFcn]') 728 * 'mouse_motion';...% permanently called by mouse motion over a figure (callback for '[wiki:WindowButtonMotionFcn !WindowButtonMotionFcn]') 729 * 'mouse_up';... % function to be activated when the mouse button is released (callback for '! WindowButtonUpFcn') 728 730 729 731 === main functions used: === … … 737 739 * 'cell2tab';... % transform a Matlab cell in a character array suitable for display in a table 738 740 * 'fill_GUI';... % fill a GUI with handles 'handles' from input data Param 739 * 'imadoc2struct';...% convert the image documentation file ImaDocinto a Matlab structure741 * 'imadoc2struct';...% convert the image documentation file [wiki:ImaDoc !ImaDoc] into a Matlab structure 740 742 * 'nomtype2pair';... creates nomenclature for index pairs knowing the image nomenclature, used by series fct 741 743 * 'nc2struct';...% transform a netcdf file in a corresponding matlab structure 742 744 * 'num2stra';...% transform number to the corresponding character string depending on the nomenclature. 743 745 * 'read_field':...% read the fields from files in different formats (netcdf files, images, video) 744 * 'read_GUI'::...% read a GUI and provide the data as a Matlab structure 'read_image';... read images or video objects 746 * 'read_GUI'::...% read a GUI and provide the data as a Matlab structure 747 * 'read_image';... read images or video objects 745 748 * 'read_multimadoc';... %read a set of Imadoc files and compare their timing of different file series 'read_xls';...%read excel files containing the list of the experiments 746 749 * 'stra2num';...% transform letters (a, b, A, B,) or numerical strings ('1','2'..) to the corresponding numbers … … 758 761 * 'compile';...% compile a Matlab function, create a binary in a subdirectory /bin 759 762 * 'copyfields';...% copy fields between two matlab structures 760 * 'delete_object';...%delete a projection object, defined by its index in the Uvmat list or by its graphic handle 763 * 'delete_object';...%delete a projection object, defined by its index in the Uvmat list or by its graphic handle 761 764 * 'displ_uvmat';...% display a message using msgbox_uvmat or on the log file in batch mode 762 765 * 'fileparts_uvmat': splits a file name in root and indices and recognize file naming convention … … 771 774 * 'griddata_uvmat';...%make 2D linear interpolation using griddata, with input appropriate for both Matlab 6.5 and 7 772 775 * 'hist_update';...% update of a current global histogram by inclusion of a new field 773 * 'imadoc2struct';...%convert the image documentation file ImaDocinto a Matlab structure776 * 'imadoc2struct';...%convert the image documentation file [wiki:ImaDoc !ImaDoc] into a Matlab structure 774 777 * 'interp2_uvmat';...% linearly interpolate an image or scalar defined on a regular grid 775 778 * '!ListDir';... scan the structure of the directory tree (for dataview.m) 776 779 * 'mask_proj';...% restrict input fields to a mask region, set to 0 outside 777 780 * 'open_uvmat';...% open with uvmat the field selected in the list of 'civ/status' or 'series/check_data_files' 778 * 'peaklock';...% 779 * 'phys_XYZ';...% transform coordi antes from pixels to phys781 * 'peaklock';...% 782 * 'phys_XYZ';...% transform coordinates from pixels to phys 780 783 * 'px_XYZ';...% transform coordiantes from phys to pixels 781 784 * 'read_civxdata';...reads civx data from netcdf files 782 785 * 'read_civdata';... reads new civ data from netcdf files 783 * 'read_ge t_field';... read the list of selected variables from the GUI get_field (TODO: use read_GUI)786 * 'read_geometry_calib';... read data on the GUI geometry_calib 784 787 * 'read_imatext';...%read .civ files (obsolete, but can be adapted to other text documentation files) 785 788 * 'read_xls';...%read excel files containing the list of the experiments 786 789 * 'reinit';...% suppress the personal parameter file 'uvmat_perso.mat' 787 790 * 'set_col_vec';...% sets the color code for vectors depending on a scalar and input parameters (used for plot_field) 791 * 'set_subdomains';...% sort a set of points defined by scattered coordinates in subdomains, as needed for tps interpolation 788 792 * 'tps_coeff';...% calculate the thin plate spline (tps) coefficients 793 * 'tps_coeff_field';...% calculate the thin plate spline (tps) coefficients with subdomains for a field structure 789 794 * 'tps_eval';... %calculate the thin plate spline (tps) interpolation at a set of points 790 795 * 'tps_eval_dxy';...% calculate the derivatives of thin plate spline (tps) interpolation at a set of points (limited to the 2D case) 791 * 'update_imadoc';... %update the ImaDoc xml file 792 * 'update_obj';... update the object representation graph and its projection field, record it in the uvmat interface 796 * 'update_imadoc';... %update the [wiki:ImaDoc !ImaDoc] xml file 793 797 * 'update_waitbar';... update the waitbar display, used for ACTION functions in the GUI 'series' 794 * 'write_plot_param'...%update plotting parameters after plot, TODO: change into a general function: fill_GUI795 798 796 799 === series functions === … … 807 810 * 'ima_remove_particles': removes particles from an image (keeping the local minimum) 808 811 * 'FFT2_detrend': calculate the 2D spectrum of the input scalar after removing the linear trend (requires the Matlab image processing toolbox). 809 * 'phys': transforms image (Unit='pixel') to real world (phys) coordinates using geometric calibration parameters. It acts if the input field contains the tag ' CoordUnit' with value 'pixel'812 * 'phys': transforms image (Unit='pixel') to real world (phys) coordinates using geometric calibration parameters. It acts if the input field contains the tag '[wiki:CoordUnit !CoordUnit]' with value 'pixel' 810 813 * 'phys_polar': this transforms the fields to polar coordinates, radius in abscissa (same unit as x, y) and azimuth in ordinate (unit =degree).
