source: trunk/src/browse_data.m @ 1071

%'browse_data': function for scanning directories in a campaign
%------------------------------------------------------------------------
% function varargout = series(varargin)
% associated with the GUI browse_data.fig

%=======================================================================
% Copyright 2008-2020, LEGI UMR 5519 / CNRS UGA G-INP, Grenoble, France
%   http://www.legi.grenoble-inp.fr
%   Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr
%
%     This file is part of the toolbox UVMAT.
%
%     UVMAT is free software; you can redistribute it and/or modify
%     it under the terms of the GNU General Public License as published
%     by the Free Software Foundation; either version 2 of the license,
%     or (at your option) any later version.
%
%     UVMAT is distributed in the hope that it will be useful,
%     but WITHOUT ANY WARRANTY; without even the implied warranty of
%     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
%     GNU General Public License (see LICENSE.txt) for more details.
%=======================================================================

function varargout = browse_data(varargin)

% Last Modified by GUIDE v2.5 11-Jul-2019 18:52:06

% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name',       mfilename, ...
    'gui_Singleton',  gui_Singleton, ...
    'gui_OpeningFcn', @browse_data_OpeningFcn, ...
    'gui_OutputFcn',  @browse_data_OutputFcn, ...
    'gui_LayoutFcn',  [] , ...
    'gui_Callback',   []);
if nargin && ischar(varargin{1}) 
    gui_State.gui_Callback = str2func(varargin{1});
end

if nargout
    [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
    gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT


%------------------------------------------------------------------------
% --- Executes just before browse_data is made visible.
function browse_data_OpeningFcn(hObject, eventdata, handles, InputDir,EnableMirror,MultiDevices)
%------------------------------------------------------------------------

%% Choose default command line output for browse_data
handles.output =hObject;% 'Cancel';

%% Update handles structure
guidata(hObject, handles);
set(hObject,'WindowButtonDownFcn',{'mouse_down'}) % allows mouse action with right button (zoom for uicontrol display)
set(hObject,'DeleteFcn',{@closefcn})%

%% Determine the position of the dialog - centered on the screen
FigPos=get(0,'DefaultFigurePosition');
OldUnits = get(hObject, 'Units');
set(hObject, 'Units', 'pixels');
OldPos = get(hObject,'Position');
FigWidth = OldPos(3);
FigHeight = OldPos(4);
ScreenUnits=get(0,'Units');
set(0,'Units','pixels');
ScreenSize=get(0,'ScreenSize');
set(0,'Units',ScreenUnits);
FigPos(1)=1/2*(ScreenSize(3)-FigWidth);
FigPos(2)=2/3*(ScreenSize(4)-FigHeight);
FigPos(3:4)=[FigWidth FigHeight];
set(hObject, 'Position', FigPos);
set(hObject, 'Units', OldUnits);
% if exist('MultiDevices','var') && strcmp(MultiDevices,'on')
%     set(handles.DataSeries,'Max',2)
% else
%     set(handles.DataSeries,'Max',1)
% end
if exist('EnableMirror','var') && strcmp(EnableMirror,'on')
    set(handles.CreateMirror,'Visible','on')
    set(handles.mirror_txt,'Visible','on')
else
    set(handles.CreateMirror,'Visible','off')
    set(handles.mirror_txt,'Visible','off')
end

%% initialize the GUI
if isempty(regexp(InputDir,'^http:'))&& ~(exist('InputDir','var') && ischar(InputDir) && exist(InputDir,'dir'))
    InputDir=pwd;% current dir is the starting data series by default
end
if ischar(InputDir),InputDir={InputDir};end
for ilist=1:numel(InputDir)
    [ExpWithPath,DataSeries{ilist},Ext]=fileparts(InputDir{ilist});
    DataSeries{ilist}=['+/' DataSeries{ilist} Ext];
    [Experiment{ilist},Device{ilist},Ext]=fileparts(ExpWithPath);
    Device{ilist}=['+/' Device{ilist} Ext];
    [SourceDir{ilist},Experiment{ilist},Ext]=fileparts(Experiment{ilist});
    Experiment{ilist}=['+/' Experiment{ilist} Ext];
    if ~strcmp(SourceDir{ilist},SourceDir{1})||~strcmp(Experiment{ilist},Experiment{1})
        msgbox_uvmat('ERROR','replicate cannot be used with multiple root folders')
        return
    end
    if ~strcmp(DataSeries{ilist},DataSeries{1})
        set(handles.DataSeries,'enable','off')
    end
    if ~strcmp(Device{ilist},Device{1})
        set(handles.ListDevices,'enable','off')
    end
end
s=[];
% if exist(RootXml,'file')
%     [s,Heading]=xml2struct(RootXml);%read the xml file
%     if isfield(s,'SourceDir')
%         set(handles.SourceDir,'String',s.SourceDir);%display the source dir if a mirror has been opened
%         set(handles.MirrorDir,'Visible','on');%  mirror dir display
%         set(handles.MirrorDir,'String',Campaign);%display the opened mirror dir
%         set(handles.CreateMirror,'String','update_mirror')
%     end
% end
if isempty(s) %a source dir has been opened
    set(handles.SourceDir,'String',SourceDir{1});
    set(handles.MirrorDir,'Visible','off');% no mirror dir display
    set(handles.CreateMirror,'String','create_mirror')
end
set(handles.DataSeries,'String',DataSeries);
set(handles.DataSeries,'Value',(1:numel(DataSeries)));
set(handles.ListDevices,'String',Device);
set(handles.ListDevices,'Value',(1:numel(Device)));
errormsg=scan_campaign(handles,SourceDir{1},Experiment{1});
if ~isempty(errormsg)
    msgbox_uvmat('ERROR',errormsg)
    return
end

set(hObject,'Visible','on')
drawnow      
        
%------------------------------------------------------------------------
% --- Outputs from this function are returned to the command line.
function varargout = browse_data_OutputFcn(hObject, eventdata, handles)
%------------------------------------------------------------------------
% Get default command line output from handles structure
varargout{1} = handles.output;
%%%%%%%%%%%%%%%%%%delete(handles.browse_data)

%------------------------------------------------------------------------
% --- Executes on button press in SourceDir.
function SourceDir_Callback(hObject, eventdata, handles)
SourceDir=get(handles.SourceDir,'String');
ListExp=get(handles.ListExperiments,'String');
ListExp=ListExp(get(handles.ListExperiments,'Value'));
errormsg=scan_campaign(handles,SourceDir,ListExp);
if ~isempty(errormsg)
    msgbox_uvmat('ERROR',errormsg)
    return
end
%------------------------------------------------------------------------

%------------------------------------------------------------------------
% --- Executes on button press in CreateMirror.
function CreateMirror_Callback(hObject, eventdata, handles)
%------------------------------------------------------------------------
set(handles.SourceDir,'BackgroundColor',[1 1 0])% indicate action of button by yellow color
drawnow
SourceDir=get(handles.SourceDir,'String');
[SourcePath,ProjectName]=fileparts(SourceDir);
if strcmp(get(handles.MirrorDir,'Visible'),'on')
MirrorDir=get(handles.MirrorDir,'String');% name of the mirror folder
else% create the mirror folder if it does not exist
MirrorRoot=uigetfile_uvmat('select the folder which must contain the mirror directory:',SourcePath,'uigetdir');
if isempty(MirrorRoot)
return
elseif strcmp(MirrorRoot,SourcePath)
msgbox_uvmat('ERROR','The mirror folder must be different from the source')
return
else
MirrorDir=fullfile(MirrorRoot,ProjectName);
end
if exist(MirrorDir,'dir')
msgbox_uvmat('ERROR',['The folder ' MirrorDir ' chosen as new mirror campaign already exists'])
return
else
[s,errormsg]=mkdir(MirrorDir)% create the mirror dir
if s~=1
msgbox_uvmat('ERROR',['error in creating ' MirrorDir ': ' errormsg])
return
end
end
MirrorDoc.SourceDir=SourceDir;
t=struct2xml(MirrorDoc);
set(t,1,'name','DataTree');
save(t,fullfile(MirrorDir,[ProjectName '.xml']))% create an xml file in the mirror folder to indicate its source folder
set(handles.MirrorDir,'String',MirrorDir)
set(handles.MirrorDir,'Visible','on')
set(handles.CreateMirror,'String','update_mirror')
end
ExpName={''};

%% update the mirror from the source dir
if exist(SourceDir,'dir')
hdir=dir(SourceDir); %list files and dirs
idir=0;
for ilist=1:length(hdir)
if hdir(ilist).isdir% scan all subfolders
dirname=hdir(ilist).name;%
if ~isequal(dirname(1),'.')&&~isequal(dirname(1),'0')%skip subfolder beginning by '0'
idir=idir+1;
mirror=fullfile(MirrorDir,hdir(ilist).name);% corresponding name in the mirror
if ~exist(mirror,'dir')
mkdir(mirror)% create the mirror folder if it does not exist
end
ExpName{idir}=['+/' hdir(ilist).name];% insert '+/' in the list to show that it is a folder
end
% look for the list of 'devices'
else
%warning for isolated files
end
end
set(handles.ListExperiments,'String',[{'*'};ExpName'])
set(handles.ListExperiments,'Value',1)
update_experiments(handles,[{'*'};ExpName'],SourceDir,MirrorDir)
% ListExperiments_Callback(hObject, eventdata, handles) % list the content of the experiment
else
msgbox_uvmat('ERROR',['The input ' SourceDir ' is not a directory'])
end
set(handles.SourceDir,'BackgroundColor',[1 1 1])

%------------------------------------------------------------------------
% List the experiments in a campaign, filling the menu ListExperiments
%------------------------------------------------------------------------
function errormsg=scan_campaign(handles,SourceDir,Experiment)
%------------------------------------------------------------------------
errormsg='';
if ~isempty(regexp(SourceDir,'^http'))|| exist(SourceDir,'dir')
    ListStruct=dir_uvmat(SourceDir); %list files and dirs, extende to OpenDAP case
    if numel(ListStruct)>1000% A campaign folder must contain maily a list of 'experiment' sub-folders
        errormsg=[SourceDir ' contains too many items (>1000) to be a Project folder'];
        return
    end
    [ListFiles,index]=list_dir_1(SourceDir,Experiment);
    set(handles.ListExperiments,'String',ListFiles)
    set(handles.ListExperiments,'Value',index)% initialise the menu selection with the folder defined by the input
    ListExperiments_Callback([],[], handles)
else
    msgbox_uvmat('ERROR',['The input ' Campaign ' is not a directory'])
end

%------------------------------------------------------------------------
% --- Executes on selection change in ListExperiments.
%------------------------------------------------------------------------
function ListExperiments_Callback(hObject, eventdata, handles)

if strcmp(get(handles.MirrorDir,'Visible'),'on')
    SourceDir=get(handles.MirrorDir,'String');
else
    SourceDir=get(handles.SourceDir,'String');
end
ListExperiments=get(handles.ListExperiments,'String');
list_val=get(handles.ListExperiments,'Value');
ListExperiments=ListExperiments(list_val);%choose the selected experiments
ListDevices=get(handles.ListDevices,'String');% list of devices
list_val=get(handles.ListDevices,'Value');% currently selected devices
Device='';
if numel(ListDevices)>=list_val
Device=ListDevices(list_val);%choose selected devices
end
check_fix=strcmp(get(handles.ListDevices,'enable'),'off');
[ListFiles,indices]=list_dir_2(SourceDir,ListExperiments,Device,check_fix);
set(handles.ListDevices,'String',ListFiles)
set(handles.ListDevices,'Value',indices)% initialise the menu selection with the folder defined by the input
ListDevices_Callback([],[], handles)

%------------------------------------------------------------------------
% --- Executes on selection change in ListExperiments.
%------------------------------------------------------------------------
function ListDevices_Callback(hObject, eventdata, handles)

ListDevices=get(handles.ListDevices,'String');% list of devices
list_val=get(handles.ListDevices,'Value');% currently selected devices
ListDevices=ListDevices(list_val);%choose selected devices
if strcmp(get(handles.MirrorDir,'Visible'),'on')
    SourceDir=get(handles.MirrorDir,'String');
else
    SourceDir=get(handles.SourceDir,'String');
end
ListExperiments=get(handles.ListExperiments,'String');
list_val=get(handles.ListExperiments,'Value');
ListExperiments=ListExperiments(list_val);%choose the selected experiments

DataSeries=get(handles.DataSeries,'String');
list_val=get(handles.DataSeries,'Value');
if numel(DataSeries)>=list_val
    DataSeries=DataSeries(list_val);
else
    DataSeries=[];
end
check_fix=strcmp(get(handles.DataSeries,'enable'),'off');
[ListFiles,indices]=list_dir_3(SourceDir,ListExperiments,ListDevices,DataSeries,check_fix);
set(handles.DataSeries,'String',ListFiles)
set(handles.DataSeries,'Value',indices)% initialise the menu selection with the folder defined by the input

%------------------------------------------------------------------------
% --- List the DataSeries when a set of experiments is selected
%------------------------------------------------------------------------
% function list_dataseries(handles,ListExperiments,MirrorPath)
% 
% DataSeries={};
% for iexp=1:numel(ListExperiments)
% if strcmp(ListExperiments{iexp}(1),'+')% if the item is a directory
% ListExperiments{iexp}(1)=[];%remove the first char '+' used to mark folders
% ListStruct=dir(fullfile(MirrorPath,ListExperiments{iexp})); %list files and dir in the source experiment directory
% ListCells=struct2cell(ListStruct);%transform dir struct to a cell arrray
% ListFiles=ListCells(1,:);%list of dir and file  names
% cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . )
% cell_remove_tild=regexp(ListFiles,'~$');% detect tild the end of file nqme (do not list)
% check_keep=cellfun('isempty', cell_remove) & cellfun('isempty', cell_remove_tild);
% check_dir=cell2mat(ListCells(4,:));% =1 for directories, =0 for files
% for ilist=1:numel(ListFiles)
%     if check_keep(ilist)% loop on eligible DataSeries folders
%         mirror=fullfile(MirrorPath,ListExperiments{iexp},ListFiles{ilist});%source folder
%         if ~exist(mirror,'file') && ~exist(mirror,'dir')% if the name is a broken link
%             delete(mirror)% delete broken link
%         else %update the list of dataSeries
%             [tild,msg]=fileattrib(mirror);
%             if check_dir(ilist)
%                 ListFiles{ilist}=['+/' ListFiles{ilist}];%mark dir by '+' in the list
%             end
%             if isempty(find(strcmp(ListFiles{ilist},DataSeries), 1))% if the item is not already in DataSeries
%                 DataSeries=[DataSeries;ListFiles{ilist}]; %append the item to the list
%             end
%         end
%     end
% end
% end
% end
% if get(handles.CheckDevices,'Value')
% set(handles.ListDevices,'Value',1)
% set(handles.ListDevices,'String',sort(DataSeries))
% CheckDevices_Callback([],[], handles)
% else
% set(handles.DataSeries,'Value',1)
% set(handles.DataSeries,'String',sort(DataSeries))
% end

%------------------------------------------------------------------------
% Provide a list to display
%------------------------------------------------------------------------
function [ListFiles,indices]=list_dir_1(SourceDir,ListSub)

    ListStruct=dir_uvmat(SourceDir); %list files and dirs, extende to OpenDAP case
    ListCells=struct2cell(ListStruct);% transform dir struct to a cell arrray
    ListFiles=ListCells(1,:);
    check_dir=cell2mat(ListCells(4,:));% =1 for directories, =0 for files
    ListFiles(check_dir)=regexprep(ListFiles(check_dir),'^.+','+/$0');% put '+/' in front of dir name display
    cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . )
    check_keep=cellfun('isempty', cell_remove);
    ListFiles=sort((ListFiles(check_keep))');

if ischar(ListSub)
    indices=find(strcmp(ListSub,ListFiles));
else
    indices=[];
    for ilist=1:numel(ListSub)
        index=find(strcmp(ListSub{ilist},ListFiles));
        indices=[indices index];
    end
end
if isempty(indices), indices=1; end

%------------------------------------------------------------------------
% Provide a list to display
%------------------------------------------------------------------------
function [ListFilesTot,indices]=list_dir_2(SourceDir,ListDir,ListSub,check_fix)
ListFilesTot={};
for ilist=1:numel(ListDir)
    if ~isempty(regexp(ListDir{ilist},'^\+/'))
    ListDir{ilist}=regexprep(ListDir{ilist},'^\+/','');
    ListStruct=dir_uvmat(fullfile(SourceDir,ListDir{ilist})); %list files and dirs, extende to OpenDAP case
    ListCells=struct2cell(ListStruct);% transform dir struct to a cell arrray
    ListFiles=ListCells(1,:);
    check_dir=cell2mat(ListCells(4,:));% =1 for directories, =0 for files
    ListFiles(check_dir)=regexprep(ListFiles(check_dir),'^.+','+/$0');% put '+/' in front of dir name display
    cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . )
    check_keep=cellfun('isempty', cell_remove);
    ListFilesTot=[ListFilesTot (ListFiles(check_keep))];
    end
end
ListFilesTot=unique(ListFilesTot);
if ischar(ListSub)
    indices=find(strcmp(ListSub,ListFilesTot));
else
    indices=[];
    for ilist=1:numel(ListSub)
        index=find(strcmp(ListSub{ilist},ListFilesTot));
        indices=[indices index];
    end
    if check_fix
        index_init=1:numel(ListFilesTot);
        %indices=sort(indices)
        index_init(indices)=[];
       ListFilesTot=ListFilesTot([indices index_init]);
       indices=1:numel(indices);
    end      
end
if isempty(indices), indices=1; end


%------------------------------------------------------------------------
% Provide the list (ListFilesTot) to display in DataSeries with the selected indices
%------------------------------------------------------------------------
function [ListFilesTot,indices]=list_dir_3(SourceDir,ListDir,ListSub,ListSubSub,check_fix)
% INPUT:
%SourceDir: path to the displayed directories
%ListDir: list of file and folder names under SourceDir (column 'Experiments')
%ListSub: list of file and folder in the second column 'Devices')
%ListSubSub: prvious list of file and folder in the third column 'DataSeries', used to mark the selected indices
ListFilesTot={};
for ilist=1:numel(ListDir)
    if ~isempty(regexp(ListDir{ilist},'^\+/'))
        ListDir{ilist}=regexprep(ListDir{ilist},'^\+/','');
        for isub=1:numel(ListSub)
            if ~isempty(regexp(ListSub{isub},'^\+/'))
                ListSub{isub}=regexprep(ListSub{isub},'^\+/','');
                ListStruct=dir_uvmat(fullfile(SourceDir,ListDir{ilist},ListSub{isub})); %list files and dirs, extende to OpenDAP case
                ListCells=struct2cell(ListStruct);% transform dir struct to a cell arrray
                ListFiles=ListCells(1,:);
                check_xml=~cellfun('isempty',regexp(ListFiles,'(\.xml|~)$'));% detect non xml files and files not marked by ~
                check_dir=cell2mat(ListCells(4,:));% =1 for directories, =0 for files
                nbfiles=numel(find(~check_xml & ~check_dir));% number of non xml files
                check_dir=check_dir & cellfun('isempty', regexp(ListFiles,'^(-|\.|\+/\.)'));% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . )
                ListFiles(check_dir)=regexprep(ListFiles(check_dir),'^.+','+/$0');% put '+/' in front of dir name display
                %cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . )         
                ListFiles=ListFiles(check_dir | check_xml);           
                ListFilesTot=[ListFilesTot ListFiles];
                if nbfiles>0
                    ListFilesTot=[ListFilesTot {[num2str(nbfiles) ' files']}];
                end
            end
        end
    end
end
ListFilesTot=unique(ListFilesTot);
if ischar(ListSubSub)
    indices=find(strcmp(ListSubSub,ListFilesTot));
else
    indices=[];
    for ilist=1:numel(ListSubSub)
        index=find(strcmp(ListSubSub{ilist},ListFilesTot));
        if check_fix && isempty(index)
            ListFilesTot=[ListFilesTot {['---' ListSubSub{ilist}]}];
            index=numel(ListFilesTot);
        end
        indices=[indices index];
    end
    if check_fix
        index_init=1:numel(ListFilesTot);
        index_init(indices)=[];
       ListFilesTot=ListFilesTot([indices index_init]);
       indices=1:numel(indices);
    end      
end
if isempty(indices), indices=1; end


%------------------------------------------------------------------------
% --- Executes when the mirror is created or updated
%------------------------------------------------------------------------
function update_experiments(handles,ListExperiments,CampaignPath,MirrorPath)

DataSeries={};
for iexp=1:numel(ListExperiments)
    if strcmp(ListExperiments{iexp}(1),'+')% if the item is a directory
        ListExperiments{iexp}(1)=[];
        ListStruct=dir(fullfile(CampaignPath,ListExperiments{iexp})); %list files and dir in the source experiment directory
        ListCells=struct2cell(ListStruct);%transform dir struct to a cell arrray
        ListFiles=ListCells(1,:);%list of dir and file  names
        cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . )
        check_keep=cellfun('isempty', cell_remove);
        check_dir=cell2mat(ListCells(4,:));% =1 for directories, =0 for files
        for ilist=1:numel(ListFiles)
            if check_keep(ilist)% loop on eligible DataSeries folders
                DataSeries=fullfile(CampaignPath,ListExperiments{iexp},ListFiles{ilist});%source folder
                if ~isempty(MirrorPath)
                    mirror=fullfile(MirrorPath,ListExperiments{iexp},ListFiles{ilist});
                    if exist(mirror,'file')% if mirror already exists as a file or folder
                        [tild,msg]=fileattrib(mirror);
                        if strcmp(msg.Name,mirror)%if the mirror name already exists as a local file or dir
                            if msg.directory% case of a folder
                                answer=msgbox_uvmat('INPUT_Y-N',['replace local folder ' msg.Name ' by a link to the source dir']);
                                if strcmp(answer,'Yes')
                                    [ss,msg]=rmdir(mirror);
                                    if ss==1
                                        system(['ln -s ' DataSeries ' ' mirror]); % create the link to the source folder
                                    else
                                        msgbox_uvmat('ERROR',['enable to delete local folder: ' msg]);
                                    end
                                end
                            else % case of an existing mirror file
                                answer=msgbox_uvmat('INPUT_Y-N',['replace local file ' msg.Name ' by a link to the source file']);
                                if strcmp(answer,'Yes')
                                    delete(mirror);
                                    system(['ln -s ' DataSeries ' ' mirror]); % create the link to the source folder
                                end
                            end
                        end
                    else% create mirror to the data series if needed
                        system(['ln -s ' DataSeries ' ' mirror]); % create the link to the source folder
                    end
                    if isempty(find(strcmp(ListFiles{ilist},DataSeries), 1))% if the item is not already in DataSeries
                        if check_dir(ilist)
                            ListFiles{ilist}=['+/' ListFiles{ilist}];%mark dir by '+' in the list
                        end
                        DataSeries=[DataSeries;ListFiles{ilist}]; %append the item to the list
                    end
                end
            end
        end
    end
end
set(handles.DataSeries,'String',sort(DataSeries))

%------------------------------------------------------------------------
% --- Executes on button press in CampaignDoc.
function CampaignDoc_Callback(hObject, eventdata, handles)
%------------------------------------------------------------------------
answer=msgbox_uvmat('INPUT_Y-N','This function will update the global xml rpresentation of the data set and the Heading of each xml file');
if ~isequal(answer{1},'OK')
    return
end
set(handles.ListExperiments,'Value',1)
ListExperiments_Callback(hObject, eventdata, handles)%update the overview of the experiment directories
DataviewData=get(handles.browse_data,'UserData');
List=DataviewData.List;
Currentpath=get(handles.SourceDir,'String');
[Currentpath,Campaign,DirExt]=fileparts(Currentpath);
Campaign=[Campaign DirExt];
t=xmltree;
t=set(t,1,'name','CampaignDoc');
t = attributes(t,'add',1,'source','directory');
SubCampaignTest=get(handles.SubCampaignTest,'Value');
root_uid=1;
if SubCampaignTest
    %TO DO open an exoiting xml doc
    [t,root_uid]=add(t,1,'element','SubCampaign');
    t =attributes(t,'add',root_uid,'DirName',Campaign);
end
for iexp=1:length(List.Experiment)
    set(handles.ListExperiments,'Value',iexp+1)
    drawnow
    test_mod=0;
    [t,uid_exp]=add(t,root_uid,'element','Experiment');
    t = attributes(t,'add',uid_exp,'i',num2str(iexp));
    ExpName=List.Experiment{iexp}.name;
    t = attributes(t,'add',uid_exp,'DirName',List.Experiment{iexp}.name);

    if isfield(List.Experiment{iexp},'Device')
        for idevice=1:length(List.Experiment{iexp}.Device)
            [t,uid_device]=add(t,uid_exp,'element','Device');
            DeviceName=List.Experiment{iexp}.Device{idevice}.name;
            t = attributes(t,'add',uid_device,'DirName',List.Experiment{iexp}.Device{idevice}.name);
            if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile')
                for ixml=1:length(List.Experiment{iexp}.Device{idevice}.xmlfile)
                    FileName=List.Experiment{iexp}.Device{idevice}.xmlfile{ixml};
                    [Title,test]=check_heading(Currentpath,Campaign,ExpName,DeviceName,[],FileName,SubCampaignTest);
                    if test
                        disp([List.Experiment{iexp}.Device{idevice}.xmlfile{ixml} ' , Heading updated'])
                    end
                    if isequal(Title,'ImaDoc')
                        [t,uid_xml]=add(t,uid_device,'element','ImaDoc');
                        t = attributes(t,'add',uid_xml,'source','file');
                        [t]=add(t,uid_xml,'chardata',List.Experiment{iexp}.Device{idevice}.xmlfile{ixml});
                    end
                end
            elseif isfield(List.Experiment{iexp}.Device{idevice},'Record')
                for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record)
                    RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name;
                    [t,uid_record]=add(t,uid_device,'element','Record');
                    t = attributes(t,'add',uid_record,'DirName',RecordName);
                    if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile')
                        for ixml=1:length(List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile)
                            FileName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile{ixml};
                            [Title,test]=check_heading(Currentpath,Campaign,ExpName,DeviceName,RecordName,FileName,SubCampaignTest);
                            if test
                                disp([FileName ' , Heading updated'])
                            end
                            [t,uid_xml]=add(t,uid_record,'element','ImaDoc');
                            t = attributes(t,'add',uid_xml,'source','file');
                            [t]=add(t,uid_xml,'chardata',FileName);
                        end
                    end
                end
            end
        end
    end
end
set(handles.ListExperiments,'Value',1)
outputdir=get(handles.SourceDir,'String');
[path,dirname]=fileparts(outputdir);
outputfile=fullfile(outputdir,[dirname '.xml']);
%campaigndoc(t);
save(t,outputfile)



% %------------------------------------------------------------------------
% % --- Executes on button press in OK.
% %------------------------------------------------------------------------
% function OK_Callback(hObject, eventdata, handles)
% 
% if strcmp(get(handles.MirrorDir,'Visible'),'on')
%     Campaign=get(handles.MirrorDir,'String');
% else
%     Campaign=get(handles.SourceDir,'String');
% end
% handles.output=[];
% handles.output.Campaign=Campaign;
% Experiment=get(handles.ListExperiments,'String');
% IndicesExp=get(handles.ListExperiments,'Value');
% if ~isequal(IndicesExp,1)% if first element ('*') selected all the experiments are selected
%     Experiment=Experiment(IndicesExp);% use the selection of the list of experiments
% end
% Experiment=regexprep(Experiment,'^\+/','');% remove the +/ used to mark dir
% Device=get(handles.DataSeries,'String');
% Value=get(handles.DataSeries,'Value');
% Device=Device(Value);
% Device=regexprep(Device,'^\+/','');% remove the +/ used to mark dir
% Device=regexprep(Device,'^~','');% remove the ~ used to mark symbolic link
% handles.output.Experiment=Experiment;
% handles.output.DataSeries=Device;
% guidata(hObject, handles);% Update handles structure
% uiresume(handles.browse_data);
% drawnow

%------------------------------------------------------------------------
% --- Executes on button press in HELP.
function HELP_Callback(hObject, eventdata, handles)
path_to_uvmat=which ('uvmat');% check the path of uvmat
pathelp=fileparts(path_to_uvmat);
helpfile=fullfile(pathelp,'UVMAT_DOC','uvmat_doc.html');
if isempty(dir(helpfile)), msgbox_uvmat('ERROR','Please put the help file uvmat_doc.html in the directory UVMAT/UVMAT_DOC')
else
web([helpfile '#dataview'])    
end

%------------------------------------------------------------------------
% --- Executes when user attempts to close browse_data.
%------------------------------------------------------------------------
function closefcn(gcbo, eventdata)

hseries=findobj(allchild(0),'Tag','series');
if ~isempty(hseries)
    hreplicate=findobj(hseries,'Tag','Replicate');
    set(hreplicate,'Value',0)
end
hcalib=findobj(allchild(0),'Tag','geometry_calib');
if ~isempty(hcalib)
    hreplicate=findobj(hcalib,'Tag','Replicate');
    set(hreplicate,'Value',0)
end

% %------------------------------------------------------------------------
% % --- Executes on key press over figure1 with no controls selected.
% %------------------------------------------------------------------------
% function browse_data_KeyPressFcn(hObject, eventdata, handles)
    
% % Check for "enter" or "escape"
% if isequal(get(hObject,'CurrentKey'),'escape')
%     % User said no by hitting escape
%     handles.output = 'Cancel';
%     
%     % Update handles structure
%     guidata(hObject, handles);
%     
%     uiresume(handles.browse_data);
% end
% if isequal(get(hObject,'CurrentKey'),'return')
%     uiresume(handles.browse_data);
% end 


% --- Executes on button press in Up.
function Down_Callback(hObject, eventdata, handles)
SourceDir=get(handles.SourceDir,'String');
ListExperiments=get(handles.ListExperiments,'String');
list_val=get(handles.ListExperiments,'Value');
if ischar(ListExperiments)
    Exp=ListExperiments;
else
    Exp=ListExperiments{list_val(1)};
end
Exp=regexprep(Exp,'^\+/','');
SourceDirNew=fullfile(SourceDir,Exp);
set(handles.SourceDir,'String',SourceDirNew);% New SourceDir
ListDevices=get(handles.ListDevices,'String');
DeviceIndices=get(handles.ListDevices,'Value');
set(handles.ListExperiments,'String',ListDevices);%replace Experiments by Devices
set(handles.ListExperiments,'Value',DeviceIndices);%replace Experiments by Devices
DataSeries=get(handles.DataSeries,'String');
list_val=get(handles.DataSeries,'Value');
set(handles.ListDevices,'String',DataSeries);%replace Devices by DataSeries
set(handles.ListDevices,'Value',list_val);%replace Devices by DataSeries

[ListFiles,indices]=list_dir_3(SourceDirNew,ListDevices(DeviceIndices),DataSeries(list_val),[],0);
set(handles.DataSeries,'String',ListFiles)
set(handles.DataSeries,'Value',indices)% initialise the menu selection with the folder defined by the input


% --- Executes on button press in Down.
function Up_Callback(hObject, eventdata, handles)
SourceDir=get(handles.SourceDir,'String');
[SourceDir,Exp]=fileparts(SourceDir);
set(handles.SourceDir,'String',SourceDir)

% set(handles.ListExperiments,'Value',indices)
%[ListFiles,indices]=list_dir_1(SourceDir,Exp);
% set(handles.ListExperiments,'String',ListFiles)
% set(handles.ListExperiments,'Value',indices)
ListDevices=get(handles.ListDevices,'String');
DeviceIndices=get(handles.ListDevices,'Value');
set(handles.DataSeries,'String',ListDevices);
set(handles.DataSeries,'Value',DeviceIndices);

ListExperiments=get(handles.ListExperiments,'String');
ExpIndices=get(handles.ListExperiments,'Value');
set(handles.ListDevices,'String',ListExperiments);
set(handles.ListDevices,'Value',ExpIndices);

set(handles.ListExperiments,'String',{['+/' Exp]})
set(handles.ListExperiments,'Value',1)

% ListExperiments=get(handles.ListExperiments,'String');
% list_val=get(handles.ListExperiments,'Value');
% SourceFolder=regexprep(ListExperiments{list_val(1)},'+','');
% set(handles.SourceDir,'String',fullfile(SourceDir,SourceFolder))
% DataSeries=get(handles.DataSeries,'String');
% ValueDevice=get(handles.DataSeries,'Value');
% set(handles.ListExperiments,'String',DataSeries)
% set(handles.ListExperiments,'Value',ValueDevice)
% ListExperiments_Callback(hObject, [], handles)


% % --- Executes on selection change in DataSeries.
% function DataSeries_Callback(hObject, eventdata, handles)
% SourceDir=get(handles.SourceDir,'String');
% ListData=get(handles.DataSeries,'String');
% Folder=ListData{get(handles.DataSeries,'Value')};
% if ~isempty(regexp(Folder,'^\+/'))% if a folder is selected
%     Folder=regexprep(Folder,'\+/','');
%     ListExperiments=get(handles.ListExperiments,'String');
%     list_val=get(handles.ListExperiments,'Value');
%     for iexp=1:numel(list_val)
%         ExpName=regexprep(ListExperiments{list_val(iexp)},'\+/','');
%         FullName=fullfile(SourceDir,ExpName,Folder);
%         dd=dir(FullName);
%         check_sub=1;
%         for idir=1:numel(dd)
%             ListData{ilist}=dd(ilist).name;
%             if dd(ilist).isdir && ~strcmp(dd(ilist).name,'.')&& ~strcmp(dd(ilist).name,'..')&& isempty(regexp(dd(ilist).name,'^_LOG'))...
%                     && isempty(regexp(dd(ilist).name,'^_LOG'))&& isempty(regexp(dd(ilist).name,'^_XML'))
%                check_sub=1;
%                ListData{ilist}=['+/' dd(ilist).name];
%             end
%         end
%         if check_sub
%         set(handles.ListDevices,'String',ListData);
%                 set(handles.ListDevices,'Visible','on');
%                 set(handles.DataSeries,'String',ListData)
%                 break
%         end
%     end
% end

% % --- Executes on button press in CheckDevices.
% function CheckDevices_Callback(hObject, eventdata, handles)
% if get(handles.CheckDevices,'Value')
%     set(handles.ListDevices,'Visible','on')
%     ListDevices=get(handles.DataSeries,'String');
%     Index=get(handles.DataSeries,'Value');
%     set(handles.ListDevices,'String',ListDevices)
%     set(handles.ListDevices,'Value',Index)
%     set(handles.DataSeries,'Value',1)
%     if strcmp(get(handles.MirrorDir,'Visible'),'on')
%     MirrorPath=get(handles.MirrorDir,'String');
%     else
%     MirrorPath=get(handles.SourceDir,'String');
%     end
%     IndexExperiment=get(handles.ListExperiments,'Value');
%     ListExperiment=get(handles.ListExperiments,'String');
%     Experiment=ListExperiment{get(handles.ListExperiments,'Value')};
%     Experiment=regexprep(Experiment,'^\+/','');% remove the +/ used to mark dir
%     Experiment=regexprep(Experiment,'^~','');% remove the ~ used to mark symbolic link
%     Device=regexprep(ListDevices{Index},'^\+/','');% remove the +/ used to mark dir
%     Device=regexprep(Device,'^~','');% remove the ~ used to mark symbolic link
%     DataSeries=dir(fullfile(MirrorPath,Experiment,Device));
%     DataSeriesCell=struct2cell(DataSeries);
%     set(handles.DataSeries,'String',DataSeriesCell(1,:)')
% else
%     ListDevices=get(handles.ListDevices,'String');
%     Index=get(handles.ListDevices,'Value');
%     set(handles.ListDevices,'Visible','off')
%     set(handles.DataSeries,'String',ListDevices)
%     set(handles.DataSeries,'Value',Index)
% end


% --- Executes when user attempts to close browse_data.
function browse_data_CloseRequestFcn(hObject, eventdata, handles)
% hObject    handle to browse_data (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: delete(hObject) closes the figure
delete(hObject);