1 | |
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2 | %'browse_data': function for scanning directories in a campaign |
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3 | %------------------------------------------------------------------------ |
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4 | % function varargout = series(varargin) |
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5 | % associated with the GUI browse_data.fig |
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6 | |
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7 | %======================================================================= |
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8 | % Copyright 2008-2020, LEGI UMR 5519 / CNRS UGA G-INP, Grenoble, France |
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9 | % http://www.legi.grenoble-inp.fr |
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10 | % Joel.Sommeria - Joel.Sommeria (A) legi.cnrs.fr |
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11 | % |
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12 | % This file is part of the toolbox UVMAT. |
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13 | % |
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14 | % UVMAT is free software; you can redistribute it and/or modify |
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15 | % it under the terms of the GNU General Public License as published |
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16 | % by the Free Software Foundation; either version 2 of the license, |
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17 | % or (at your option) any later version. |
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18 | % |
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19 | % UVMAT is distributed in the hope that it will be useful, |
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20 | % but WITHOUT ANY WARRANTY; without even the implied warranty of |
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21 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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22 | % GNU General Public License (see LICENSE.txt) for more details. |
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23 | %======================================================================= |
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24 | |
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25 | function varargout = browse_data(varargin) |
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26 | |
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27 | % Last Modified by GUIDE v2.5 11-Jul-2019 18:52:06 |
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28 | |
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29 | % Begin initialization code - DO NOT EDIT |
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30 | gui_Singleton = 1; |
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31 | gui_State = struct('gui_Name', mfilename, ... |
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32 | 'gui_Singleton', gui_Singleton, ... |
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33 | 'gui_OpeningFcn', @browse_data_OpeningFcn, ... |
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34 | 'gui_OutputFcn', @browse_data_OutputFcn, ... |
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35 | 'gui_LayoutFcn', [] , ... |
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36 | 'gui_Callback', []); |
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37 | if nargin && ischar(varargin{1}) |
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38 | gui_State.gui_Callback = str2func(varargin{1}); |
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39 | end |
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40 | |
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41 | if nargout |
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42 | [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); |
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43 | else |
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44 | gui_mainfcn(gui_State, varargin{:}); |
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45 | end |
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46 | % End initialization code - DO NOT EDIT |
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47 | |
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48 | |
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49 | %------------------------------------------------------------------------ |
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50 | % --- Executes just before browse_data is made visible. |
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51 | function browse_data_OpeningFcn(hObject, eventdata, handles, InputDir,EnableMirror,MultiDevices) |
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52 | %------------------------------------------------------------------------ |
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53 | |
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54 | %% Choose default command line output for browse_data |
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55 | handles.output =hObject;% 'Cancel'; |
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56 | |
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57 | %% Update handles structure |
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58 | guidata(hObject, handles); |
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59 | set(hObject,'WindowButtonDownFcn',{'mouse_down'}) % allows mouse action with right button (zoom for uicontrol display) |
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60 | set(hObject,'DeleteFcn',{@closefcn})% |
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61 | |
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62 | %% Determine the position of the dialog - centered on the screen |
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63 | FigPos=get(0,'DefaultFigurePosition'); |
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64 | OldUnits = get(hObject, 'Units'); |
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65 | set(hObject, 'Units', 'pixels'); |
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66 | OldPos = get(hObject,'Position'); |
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67 | FigWidth = OldPos(3); |
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68 | FigHeight = OldPos(4); |
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69 | ScreenUnits=get(0,'Units'); |
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70 | set(0,'Units','pixels'); |
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71 | ScreenSize=get(0,'ScreenSize'); |
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72 | set(0,'Units',ScreenUnits); |
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73 | FigPos(1)=1/2*(ScreenSize(3)-FigWidth); |
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74 | FigPos(2)=2/3*(ScreenSize(4)-FigHeight); |
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75 | FigPos(3:4)=[FigWidth FigHeight]; |
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76 | set(hObject, 'Position', FigPos); |
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77 | set(hObject, 'Units', OldUnits); |
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78 | if exist('EnableMirror','var') && strcmp(EnableMirror,'on') |
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79 | set(handles.CreateMirror,'Visible','on') |
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80 | set(handles.mirror_txt,'Visible','on') |
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81 | else |
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82 | set(handles.CreateMirror,'Visible','off') |
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83 | set(handles.mirror_txt,'Visible','off') |
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84 | end |
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85 | |
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86 | %% initialize the GUI |
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87 | if isempty(regexp(InputDir,'^http:'))&& ~(exist('InputDir','var') && ischar(InputDir) && exist(InputDir,'dir')) |
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88 | InputDir=pwd;% current dir is the starting data series by default |
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89 | end |
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90 | if ischar(InputDir),InputDir={InputDir};end |
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91 | for ilist=1:numel(InputDir) |
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92 | [ExpWithPath,DataSeries{ilist},Ext]=fileparts(InputDir{ilist}); |
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93 | DataSeries{ilist}=['+/' DataSeries{ilist} Ext]; |
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94 | [Experiment{ilist},Device{ilist},Ext]=fileparts(ExpWithPath); |
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95 | Device{ilist}=['+/' Device{ilist} Ext]; |
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96 | [SourceDir{ilist},Experiment{ilist},Ext]=fileparts(Experiment{ilist}); |
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97 | Experiment{ilist}=['+/' Experiment{ilist} Ext]; |
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98 | if ~strcmp(SourceDir{ilist},SourceDir{1})||~strcmp(Experiment{ilist},Experiment{1}) |
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99 | msgbox_uvmat('ERROR','replicate cannot be used with multiple root folders') |
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100 | return |
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101 | end |
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102 | if ~strcmp(DataSeries{ilist},DataSeries{1}) |
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103 | set(handles.DataSeries,'enable','off') |
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104 | end |
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105 | if ~strcmp(Device{ilist},Device{1}) |
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106 | set(handles.ListDevices,'enable','off') |
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107 | end |
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108 | end |
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109 | s=[]; |
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110 | if isempty(s) %a source dir has been opened |
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111 | set(handles.SourceDir,'String',SourceDir{1}); |
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112 | set(handles.MirrorDir,'Visible','off');% no mirror dir display |
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113 | set(handles.CreateMirror,'String','create_mirror') |
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114 | end |
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115 | set(handles.DataSeries,'String',DataSeries); |
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116 | set(handles.DataSeries,'Value',(1:numel(DataSeries))); |
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117 | set(handles.ListDevices,'String',Device); |
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118 | set(handles.ListDevices,'Value',(1:numel(Device))); |
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119 | errormsg=scan_campaign(handles,SourceDir{1},Experiment{1}); |
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120 | if ~isempty(errormsg) |
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121 | msgbox_uvmat('ERROR',errormsg) |
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122 | return |
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123 | end |
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124 | |
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125 | set(hObject,'Visible','on') |
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126 | drawnow |
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127 | |
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128 | %------------------------------------------------------------------------ |
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129 | % --- Outputs from this function are returned to the command line. |
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130 | function varargout = browse_data_OutputFcn(hObject, eventdata, handles) |
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131 | %------------------------------------------------------------------------ |
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132 | % Get default command line output from handles structure |
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133 | varargout{1} = handles.output; |
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134 | %%%%%%%%%%%%%%%%%%delete(handles.browse_data) |
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135 | |
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136 | %------------------------------------------------------------------------ |
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137 | % --- Executes on button press in SourceDir. |
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138 | function SourceDir_Callback(hObject, eventdata, handles) |
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139 | SourceDir=get(handles.SourceDir,'String'); |
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140 | ListExp=get(handles.ListExperiments,'String'); |
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141 | ListExp=ListExp(get(handles.ListExperiments,'Value')); |
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142 | errormsg=scan_campaign(handles,SourceDir,ListExp); |
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143 | if ~isempty(errormsg) |
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144 | msgbox_uvmat('ERROR',errormsg) |
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145 | return |
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146 | end |
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147 | %------------------------------------------------------------------------ |
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148 | |
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149 | %------------------------------------------------------------------------ |
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150 | % --- Executes on button press in CreateMirror. |
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151 | function CreateMirror_Callback(hObject, eventdata, handles) |
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152 | %------------------------------------------------------------------------ |
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153 | set(handles.SourceDir,'BackgroundColor',[1 1 0])% indicate action of button by yellow color |
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154 | drawnow |
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155 | SourceDir=get(handles.SourceDir,'String'); |
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156 | [SourcePath,ProjectName]=fileparts(SourceDir); |
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157 | if strcmp(get(handles.MirrorDir,'Visible'),'on') |
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158 | MirrorDir=get(handles.MirrorDir,'String');% name of the mirror folder |
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159 | else% create the mirror folder if it does not exist |
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160 | MirrorRoot=uigetfile_uvmat('select the folder which must contain the mirror directory:',SourcePath,'uigetdir'); |
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161 | if isempty(MirrorRoot) |
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162 | return |
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163 | elseif strcmp(MirrorRoot,SourcePath) |
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164 | msgbox_uvmat('ERROR','The mirror folder must be different from the source') |
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165 | return |
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166 | else |
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167 | MirrorDir=fullfile(MirrorRoot,ProjectName); |
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168 | end |
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169 | if exist(MirrorDir,'dir') |
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170 | msgbox_uvmat('ERROR',['The folder ' MirrorDir ' chosen as new mirror campaign already exists']) |
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171 | return |
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172 | else |
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173 | [s,errormsg]=mkdir(MirrorDir)% create the mirror dir |
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174 | if s~=1 |
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175 | msgbox_uvmat('ERROR',['error in creating ' MirrorDir ': ' errormsg]) |
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176 | return |
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177 | end |
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178 | end |
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179 | MirrorDoc.SourceDir=SourceDir; |
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180 | t=struct2xml(MirrorDoc); |
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181 | set(t,1,'name','DataTree'); |
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182 | save(t,fullfile(MirrorDir,[ProjectName '.xml']))% create an xml file in the mirror folder to indicate its source folder |
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183 | set(handles.MirrorDir,'String',MirrorDir) |
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184 | set(handles.MirrorDir,'Visible','on') |
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185 | set(handles.CreateMirror,'String','update_mirror') |
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186 | end |
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187 | ExpName={''}; |
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188 | |
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189 | %% update the mirror from the source dir |
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190 | if exist(SourceDir,'dir') |
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191 | hdir=dir(SourceDir); %list files and dirs |
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192 | idir=0; |
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193 | for ilist=1:length(hdir) |
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194 | if hdir(ilist).isdir% scan all subfolders |
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195 | dirname=hdir(ilist).name;% |
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196 | if ~isequal(dirname(1),'.')&&~isequal(dirname(1),'0')%skip subfolder beginning by '0' |
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197 | idir=idir+1; |
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198 | mirror=fullfile(MirrorDir,hdir(ilist).name);% corresponding name in the mirror |
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199 | if ~exist(mirror,'dir') |
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200 | mkdir(mirror)% create the mirror folder if it does not exist |
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201 | end |
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202 | ExpName{idir}=['+/' hdir(ilist).name];% insert '+/' in the list to show that it is a folder |
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203 | end |
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204 | % look for the list of 'devices' |
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205 | else |
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206 | %warning for isolated files |
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207 | end |
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208 | end |
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209 | set(handles.ListExperiments,'String',[{'*'};ExpName']) |
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210 | set(handles.ListExperiments,'Value',1) |
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211 | update_experiments(handles,[{'*'};ExpName'],SourceDir,MirrorDir) |
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212 | % ListExperiments_Callback(hObject, eventdata, handles) % list the content of the experiment |
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213 | else |
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214 | msgbox_uvmat('ERROR',['The input ' SourceDir ' is not a directory']) |
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215 | end |
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216 | set(handles.SourceDir,'BackgroundColor',[1 1 1]) |
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217 | |
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218 | %------------------------------------------------------------------------ |
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219 | % List the experiments in a campaign, filling the menu ListExperiments |
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220 | %------------------------------------------------------------------------ |
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221 | function errormsg=scan_campaign(handles,SourceDir,Experiment) |
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222 | %------------------------------------------------------------------------ |
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223 | errormsg=''; |
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224 | if ~isempty(regexp(SourceDir,'^http'))|| exist(SourceDir,'dir') |
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225 | ListStruct=dir_uvmat(SourceDir); %list files and dirs, extende to OpenDAP case |
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226 | if numel(ListStruct)>1000% A campaign folder must contain maily a list of 'experiment' sub-folders |
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227 | errormsg=[SourceDir ' contains too many items (>1000) to be a Project folder']; |
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228 | return |
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229 | end |
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230 | [ListFiles,index]=list_dir_1(SourceDir,Experiment); |
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231 | set(handles.ListExperiments,'String',ListFiles) |
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232 | set(handles.ListExperiments,'Value',index)% initialise the menu selection with the folder defined by the input |
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233 | ListExperiments_Callback([],[], handles) |
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234 | else |
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235 | msgbox_uvmat('ERROR',['The input ' Campaign ' is not a directory']) |
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236 | end |
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237 | |
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238 | %------------------------------------------------------------------------ |
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239 | % --- Executes on selection change in ListExperiments. |
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240 | %------------------------------------------------------------------------ |
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241 | function ListExperiments_Callback(hObject, eventdata, handles) |
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242 | |
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243 | if strcmp(get(handles.MirrorDir,'Visible'),'on') |
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244 | SourceDir=get(handles.MirrorDir,'String'); |
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245 | else |
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246 | SourceDir=get(handles.SourceDir,'String'); |
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247 | end |
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248 | ListExperiments=get(handles.ListExperiments,'String'); |
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249 | list_val=get(handles.ListExperiments,'Value'); |
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250 | ListExperiments=ListExperiments(list_val);%choose the selected experiments |
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251 | ListDevices=get(handles.ListDevices,'String');% list of devices |
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252 | list_val=get(handles.ListDevices,'Value');% currently selected devices |
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253 | Device=''; |
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254 | if numel(ListDevices)>=list_val |
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255 | Device=ListDevices(list_val);%choose selected devices |
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256 | end |
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257 | check_fix=strcmp(get(handles.ListDevices,'enable'),'off'); |
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258 | [ListFiles,indices]=list_dir_2(SourceDir,ListExperiments,Device,check_fix); |
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259 | set(handles.ListDevices,'String',ListFiles) |
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260 | set(handles.ListDevices,'Value',indices)% initialise the menu selection with the folder defined by the input |
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261 | ListDevices_Callback([],[], handles) |
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262 | |
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263 | %------------------------------------------------------------------------ |
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264 | % --- Executes on selection change in ListExperiments. |
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265 | %------------------------------------------------------------------------ |
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266 | function ListDevices_Callback(hObject, eventdata, handles) |
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267 | |
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268 | ListDevices=get(handles.ListDevices,'String');% list of devices |
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269 | list_val=get(handles.ListDevices,'Value');% currently selected devices |
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270 | ListDevices=ListDevices(list_val);%choose selected devices |
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271 | if strcmp(get(handles.MirrorDir,'Visible'),'on') |
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272 | SourceDir=get(handles.MirrorDir,'String'); |
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273 | else |
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274 | SourceDir=get(handles.SourceDir,'String'); |
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275 | end |
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276 | ListExperiments=get(handles.ListExperiments,'String'); |
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277 | list_val=get(handles.ListExperiments,'Value'); |
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278 | ListExperiments=ListExperiments(list_val);%choose the selected experiments |
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279 | |
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280 | DataSeries=get(handles.DataSeries,'String'); |
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281 | list_val=get(handles.DataSeries,'Value'); |
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282 | if numel(DataSeries)>=list_val |
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283 | DataSeries=DataSeries(list_val); |
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284 | else |
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285 | DataSeries=[]; |
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286 | end |
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287 | check_fix=strcmp(get(handles.DataSeries,'enable'),'off'); |
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288 | [ListFiles,indices]=list_dir_3(SourceDir,ListExperiments,ListDevices,DataSeries,check_fix); |
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289 | set(handles.DataSeries,'String',ListFiles) |
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290 | set(handles.DataSeries,'Value',indices)% initialise the menu selection with the folder defined by the input |
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291 | |
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292 | %------------------------------------------------------------------------ |
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293 | % --- List the DataSeries when a set of experiments is selected |
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294 | %------------------------------------------------------------------------ |
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295 | % function list_dataseries(handles,ListExperiments,MirrorPath) |
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296 | % |
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297 | % DataSeries={}; |
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298 | % for iexp=1:numel(ListExperiments) |
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299 | % if strcmp(ListExperiments{iexp}(1),'+')% if the item is a directory |
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300 | % ListExperiments{iexp}(1)=[];%remove the first char '+' used to mark folders |
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301 | % ListStruct=dir(fullfile(MirrorPath,ListExperiments{iexp})); %list files and dir in the source experiment directory |
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302 | % ListCells=struct2cell(ListStruct);%transform dir struct to a cell arrray |
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303 | % ListFiles=ListCells(1,:);%list of dir and file names |
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304 | % cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . ) |
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305 | % cell_remove_tild=regexp(ListFiles,'~$');% detect tild the end of file nqme (do not list) |
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306 | % check_keep=cellfun('isempty', cell_remove) & cellfun('isempty', cell_remove_tild); |
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307 | % check_dir=cell2mat(ListCells(4,:));% =1 for directories, =0 for files |
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308 | % for ilist=1:numel(ListFiles) |
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309 | % if check_keep(ilist)% loop on eligible DataSeries folders |
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310 | % mirror=fullfile(MirrorPath,ListExperiments{iexp},ListFiles{ilist});%source folder |
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311 | % if ~exist(mirror,'file') && ~exist(mirror,'dir')% if the name is a broken link |
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312 | % delete(mirror)% delete broken link |
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313 | % else %update the list of dataSeries |
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314 | % [tild,msg]=fileattrib(mirror); |
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315 | % if check_dir(ilist) |
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316 | % ListFiles{ilist}=['+/' ListFiles{ilist}];%mark dir by '+' in the list |
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317 | % end |
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318 | % if isempty(find(strcmp(ListFiles{ilist},DataSeries), 1))% if the item is not already in DataSeries |
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319 | % DataSeries=[DataSeries;ListFiles{ilist}]; %append the item to the list |
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320 | % end |
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321 | % end |
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322 | % end |
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323 | % end |
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324 | % end |
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325 | % end |
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326 | % if get(handles.CheckDevices,'Value') |
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327 | % set(handles.ListDevices,'Value',1) |
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328 | % set(handles.ListDevices,'String',sort(DataSeries)) |
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329 | % CheckDevices_Callback([],[], handles) |
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330 | % else |
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331 | % set(handles.DataSeries,'Value',1) |
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332 | % set(handles.DataSeries,'String',sort(DataSeries)) |
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333 | % end |
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334 | |
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335 | %------------------------------------------------------------------------ |
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336 | % Provide a list to display |
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337 | %------------------------------------------------------------------------ |
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338 | function [ListFiles,indices]=list_dir_1(SourceDir,ListSub) |
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339 | |
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340 | ListStruct=dir_uvmat(SourceDir); %list files and dirs, extende to OpenDAP case |
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341 | ListCells=struct2cell(ListStruct);% transform dir struct to a cell arrray |
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342 | ListFiles=ListCells(1,:); |
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343 | index_isdir=find(strcmp('isdir',fieldnames(ListStruct))); |
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344 | check_dir=cell2mat(ListCells(index_isdir,:));% =1 for directories, =0 for files |
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345 | ListFiles(check_dir)=regexprep(ListFiles(check_dir),'^.+','+/$0');% put '+/' in front of dir name display |
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346 | cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . ) |
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347 | check_keep=cellfun('isempty', cell_remove); |
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348 | ListFiles=sort((ListFiles(check_keep))'); |
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349 | |
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350 | if ischar(ListSub) |
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351 | indices=find(strcmp(ListSub,ListFiles)); |
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352 | else |
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353 | indices=[]; |
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354 | for ilist=1:numel(ListSub) |
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355 | index=find(strcmp(ListSub{ilist},ListFiles)); |
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356 | indices=[indices index]; |
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357 | end |
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358 | end |
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359 | if isempty(indices), indices=1; end |
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360 | |
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361 | %------------------------------------------------------------------------ |
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362 | % Provide a list to display |
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363 | %------------------------------------------------------------------------ |
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364 | function [ListFilesTot,indices]=list_dir_2(SourceDir,ListDir,ListSub,check_fix) |
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365 | ListFilesTot={}; |
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366 | for ilist=1:numel(ListDir) |
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367 | if ~isempty(regexp(ListDir{ilist},'^\+/')) |
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368 | ListDir{ilist}=regexprep(ListDir{ilist},'^\+/',''); |
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369 | ListStruct=dir_uvmat(fullfile(SourceDir,ListDir{ilist})); %list files and dirs, extende to OpenDAP case |
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370 | ListCells=struct2cell(ListStruct);% transform dir struct to a cell arrray |
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371 | ListFiles=ListCells(1,:); |
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372 | index_isdir=find(strcmp('isdir',fieldnames(ListStruct))); |
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373 | check_dir=cell2mat(ListCells(index_isdir,:));% =1 for directories, =0 for files |
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374 | ListFiles(check_dir)=regexprep(ListFiles(check_dir),'^.+','+/$0');% put '+/' in front of dir name display |
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375 | cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . ) |
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376 | check_keep=cellfun('isempty', cell_remove); |
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377 | ListFilesTot=[ListFilesTot (ListFiles(check_keep))]; |
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378 | end |
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379 | end |
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380 | ListFilesTot=unique(ListFilesTot); |
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381 | if ischar(ListSub) |
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382 | indices=find(strcmp(ListSub,ListFilesTot)); |
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383 | else |
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384 | indices=[]; |
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385 | for ilist=1:numel(ListSub) |
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386 | index=find(strcmp(ListSub{ilist},ListFilesTot)); |
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387 | indices=[indices index]; |
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388 | end |
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389 | if check_fix |
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390 | index_init=1:numel(ListFilesTot); |
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391 | %indices=sort(indices) |
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392 | index_init(indices)=[]; |
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393 | ListFilesTot=ListFilesTot([indices index_init]); |
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394 | indices=1:numel(indices); |
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395 | end |
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396 | end |
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397 | if isempty(indices), indices=1; end |
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398 | |
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399 | |
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400 | %------------------------------------------------------------------------ |
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401 | % Provide the list (ListFilesTot) to display in DataSeries with the selected indices |
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402 | %------------------------------------------------------------------------ |
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403 | function [ListFilesTot,indices]=list_dir_3(SourceDir,ListDir,ListSub,ListSubSub,check_fix) |
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404 | % INPUT: |
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405 | %SourceDir: path to the displayed directories |
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406 | %ListDir: list of file and folder names under SourceDir (column 'Experiments') |
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407 | %ListSub: list of file and folder in the second column 'Devices') |
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408 | %ListSubSub: prvious list of file and folder in the third column 'DataSeries', used to mark the selected indices |
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409 | ListFilesTot={}; |
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410 | for ilist=1:numel(ListDir) |
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411 | if ~isempty(regexp(ListDir{ilist},'^\+/')) |
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412 | ListDir{ilist}=regexprep(ListDir{ilist},'^\+/',''); |
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413 | for isub=1:numel(ListSub) |
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414 | if ~isempty(regexp(ListSub{isub},'^\+/')) |
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415 | ListSub{isub}=regexprep(ListSub{isub},'^\+/',''); |
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416 | ListStruct=dir_uvmat(fullfile(SourceDir,ListDir{ilist},ListSub{isub})); %list files and dirs, extende to OpenDAP case |
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417 | ListCells=struct2cell(ListStruct);% transform dir struct to a cell arrray |
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418 | ListFiles=ListCells(1,:); |
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419 | check_xml=~cellfun('isempty',regexp(ListFiles,'(\.xml|~)$'));% detect non xml files and files not marked by ~ |
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420 | index_isdir=find(strcmp('isdir',fieldnames(ListStruct))); |
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421 | check_dir=cell2mat(ListCells(index_isdir,:));% =1 for directories, =0 for files |
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422 | nbfiles=numel(find(~check_xml & ~check_dir));% number of non xml files |
---|
423 | check_dir=check_dir & cellfun('isempty', regexp(ListFiles,'^(-|\.|\+/\.)'));% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . ) |
---|
424 | ListFiles(check_dir)=regexprep(ListFiles(check_dir),'^.+','+/$0');% put '+/' in front of dir name display |
---|
425 | %cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . ) |
---|
426 | ListFiles=ListFiles(check_dir | check_xml); |
---|
427 | ListFilesTot=[ListFilesTot ListFiles]; |
---|
428 | if nbfiles>0 |
---|
429 | ListFilesTot=[ListFilesTot {[num2str(nbfiles) ' files']}]; |
---|
430 | end |
---|
431 | end |
---|
432 | end |
---|
433 | end |
---|
434 | end |
---|
435 | ListFilesTot=unique(ListFilesTot); |
---|
436 | if ischar(ListSubSub) |
---|
437 | indices=find(strcmp(ListSubSub,ListFilesTot)); |
---|
438 | else |
---|
439 | indices=[]; |
---|
440 | for ilist=1:numel(ListSubSub) |
---|
441 | index=find(strcmp(ListSubSub{ilist},ListFilesTot)); |
---|
442 | if check_fix && isempty(index) |
---|
443 | ListFilesTot=[ListFilesTot {['---' ListSubSub{ilist}]}]; |
---|
444 | index=numel(ListFilesTot); |
---|
445 | end |
---|
446 | indices=[indices index]; |
---|
447 | end |
---|
448 | if check_fix |
---|
449 | index_init=1:numel(ListFilesTot); |
---|
450 | index_init(indices)=[]; |
---|
451 | ListFilesTot=ListFilesTot([indices index_init]); |
---|
452 | indices=1:numel(indices); |
---|
453 | end |
---|
454 | end |
---|
455 | if isempty(indices), indices=1; end |
---|
456 | |
---|
457 | |
---|
458 | %------------------------------------------------------------------------ |
---|
459 | % --- Executes when the mirror is created or updated |
---|
460 | %------------------------------------------------------------------------ |
---|
461 | function update_experiments(handles,ListExperiments,CampaignPath,MirrorPath) |
---|
462 | |
---|
463 | DataSeries={}; |
---|
464 | for iexp=1:numel(ListExperiments) |
---|
465 | if strcmp(ListExperiments{iexp}(1),'+')% if the item is a directory |
---|
466 | ListExperiments{iexp}(1)=[]; |
---|
467 | ListStruct=dir(fullfile(CampaignPath,ListExperiments{iexp})); %list files and dir in the source experiment directory |
---|
468 | ListCells=struct2cell(ListStruct);%transform dir struct to a cell arrray |
---|
469 | ListFiles=ListCells(1,:);%list of dir and file names |
---|
470 | cell_remove=regexp(ListFiles,'^(-|\.|\+/\.)');% detect strings beginning by '-' ,'.' or '+/.'(dir beginning by . ) |
---|
471 | check_keep=cellfun('isempty', cell_remove); |
---|
472 | index_isdir=find(strcmp('isdir',fieldnames(ListStruct))); |
---|
473 | check_dir=cell2mat(ListCells(index_isdir,:));% =1 for directories, =0 for files |
---|
474 | for ilist=1:numel(ListFiles) |
---|
475 | if check_keep(ilist)% loop on eligible DataSeries folders |
---|
476 | DataSeries=fullfile(CampaignPath,ListExperiments{iexp},ListFiles{ilist});%source folder |
---|
477 | if ~isempty(MirrorPath) |
---|
478 | mirror=fullfile(MirrorPath,ListExperiments{iexp},ListFiles{ilist}); |
---|
479 | if exist(mirror,'file')% if mirror already exists as a file or folder |
---|
480 | [tild,msg]=fileattrib(mirror); |
---|
481 | if strcmp(msg.Name,mirror)%if the mirror name already exists as a local file or dir |
---|
482 | if msg.directory% case of a folder |
---|
483 | answer=msgbox_uvmat('INPUT_Y-N',['replace local folder ' msg.Name ' by a link to the source dir']); |
---|
484 | if strcmp(answer,'Yes') |
---|
485 | [ss,msg]=rmdir(mirror); |
---|
486 | if ss==1 |
---|
487 | system(['ln -s ' DataSeries ' ' mirror]); % create the link to the source folder |
---|
488 | else |
---|
489 | msgbox_uvmat('ERROR',['enable to delete local folder: ' msg]); |
---|
490 | end |
---|
491 | end |
---|
492 | else % case of an existing mirror file |
---|
493 | answer=msgbox_uvmat('INPUT_Y-N',['replace local file ' msg.Name ' by a link to the source file']); |
---|
494 | if strcmp(answer,'Yes') |
---|
495 | delete(mirror); |
---|
496 | system(['ln -s ' DataSeries ' ' mirror]); % create the link to the source folder |
---|
497 | end |
---|
498 | end |
---|
499 | end |
---|
500 | else% create mirror to the data series if needed |
---|
501 | system(['ln -s ' DataSeries ' ' mirror]); % create the link to the source folder |
---|
502 | end |
---|
503 | if isempty(find(strcmp(ListFiles{ilist},DataSeries), 1))% if the item is not already in DataSeries |
---|
504 | if check_dir(ilist) |
---|
505 | ListFiles{ilist}=['+/' ListFiles{ilist}];%mark dir by '+' in the list |
---|
506 | end |
---|
507 | DataSeries=[DataSeries;ListFiles{ilist}]; %append the item to the list |
---|
508 | end |
---|
509 | end |
---|
510 | end |
---|
511 | end |
---|
512 | end |
---|
513 | end |
---|
514 | set(handles.DataSeries,'String',sort(DataSeries)) |
---|
515 | |
---|
516 | %------------------------------------------------------------------------ |
---|
517 | % --- Executes on button press in CampaignDoc. |
---|
518 | function CampaignDoc_Callback(hObject, eventdata, handles) |
---|
519 | %------------------------------------------------------------------------ |
---|
520 | answer=msgbox_uvmat('INPUT_Y-N','This function will update the global xml rpresentation of the data set and the Heading of each xml file'); |
---|
521 | if ~isequal(answer{1},'OK') |
---|
522 | return |
---|
523 | end |
---|
524 | set(handles.ListExperiments,'Value',1) |
---|
525 | ListExperiments_Callback(hObject, eventdata, handles)%update the overview of the experiment directories |
---|
526 | DataviewData=get(handles.browse_data,'UserData'); |
---|
527 | List=DataviewData.List; |
---|
528 | Currentpath=get(handles.SourceDir,'String'); |
---|
529 | [Currentpath,Campaign,DirExt]=fileparts(Currentpath); |
---|
530 | Campaign=[Campaign DirExt]; |
---|
531 | t=xmltree; |
---|
532 | t=set(t,1,'name','CampaignDoc'); |
---|
533 | t = attributes(t,'add',1,'source','directory'); |
---|
534 | SubCampaignTest=get(handles.SubCampaignTest,'Value'); |
---|
535 | root_uid=1; |
---|
536 | if SubCampaignTest |
---|
537 | %TO DO open an exoiting xml doc |
---|
538 | [t,root_uid]=add(t,1,'element','SubCampaign'); |
---|
539 | t =attributes(t,'add',root_uid,'DirName',Campaign); |
---|
540 | end |
---|
541 | for iexp=1:length(List.Experiment) |
---|
542 | set(handles.ListExperiments,'Value',iexp+1) |
---|
543 | drawnow |
---|
544 | test_mod=0; |
---|
545 | [t,uid_exp]=add(t,root_uid,'element','Experiment'); |
---|
546 | t = attributes(t,'add',uid_exp,'i',num2str(iexp)); |
---|
547 | ExpName=List.Experiment{iexp}.name; |
---|
548 | t = attributes(t,'add',uid_exp,'DirName',List.Experiment{iexp}.name); |
---|
549 | |
---|
550 | if isfield(List.Experiment{iexp},'Device') |
---|
551 | for idevice=1:length(List.Experiment{iexp}.Device) |
---|
552 | [t,uid_device]=add(t,uid_exp,'element','Device'); |
---|
553 | DeviceName=List.Experiment{iexp}.Device{idevice}.name; |
---|
554 | t = attributes(t,'add',uid_device,'DirName',List.Experiment{iexp}.Device{idevice}.name); |
---|
555 | if isfield(List.Experiment{iexp}.Device{idevice},'xmlfile') |
---|
556 | for ixml=1:length(List.Experiment{iexp}.Device{idevice}.xmlfile) |
---|
557 | FileName=List.Experiment{iexp}.Device{idevice}.xmlfile{ixml}; |
---|
558 | [Title,test]=check_heading(Currentpath,Campaign,ExpName,DeviceName,[],FileName,SubCampaignTest); |
---|
559 | if test |
---|
560 | disp([List.Experiment{iexp}.Device{idevice}.xmlfile{ixml} ' , Heading updated']) |
---|
561 | end |
---|
562 | if isequal(Title,'ImaDoc') |
---|
563 | [t,uid_xml]=add(t,uid_device,'element','ImaDoc'); |
---|
564 | t = attributes(t,'add',uid_xml,'source','file'); |
---|
565 | [t]=add(t,uid_xml,'chardata',List.Experiment{iexp}.Device{idevice}.xmlfile{ixml}); |
---|
566 | end |
---|
567 | end |
---|
568 | elseif isfield(List.Experiment{iexp}.Device{idevice},'Record') |
---|
569 | for irecord=1:length(List.Experiment{iexp}.Device{idevice}.Record) |
---|
570 | RecordName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.name; |
---|
571 | [t,uid_record]=add(t,uid_device,'element','Record'); |
---|
572 | t = attributes(t,'add',uid_record,'DirName',RecordName); |
---|
573 | if isfield(List.Experiment{iexp}.Device{idevice}.Record{irecord},'xmlfile') |
---|
574 | for ixml=1:length(List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile) |
---|
575 | FileName=List.Experiment{iexp}.Device{idevice}.Record{irecord}.xmlfile{ixml}; |
---|
576 | [Title,test]=check_heading(Currentpath,Campaign,ExpName,DeviceName,RecordName,FileName,SubCampaignTest); |
---|
577 | if test |
---|
578 | disp([FileName ' , Heading updated']) |
---|
579 | end |
---|
580 | [t,uid_xml]=add(t,uid_record,'element','ImaDoc'); |
---|
581 | t = attributes(t,'add',uid_xml,'source','file'); |
---|
582 | [t]=add(t,uid_xml,'chardata',FileName); |
---|
583 | end |
---|
584 | end |
---|
585 | end |
---|
586 | end |
---|
587 | end |
---|
588 | end |
---|
589 | end |
---|
590 | set(handles.ListExperiments,'Value',1) |
---|
591 | outputdir=get(handles.SourceDir,'String'); |
---|
592 | [path,dirname]=fileparts(outputdir); |
---|
593 | outputfile=fullfile(outputdir,[dirname '.xml']); |
---|
594 | %campaigndoc(t); |
---|
595 | save(t,outputfile) |
---|
596 | |
---|
597 | |
---|
598 | |
---|
599 | % %------------------------------------------------------------------------ |
---|
600 | % % --- Executes on button press in OK. |
---|
601 | % %------------------------------------------------------------------------ |
---|
602 | % function OK_Callback(hObject, eventdata, handles) |
---|
603 | % |
---|
604 | % if strcmp(get(handles.MirrorDir,'Visible'),'on') |
---|
605 | % Campaign=get(handles.MirrorDir,'String'); |
---|
606 | % else |
---|
607 | % Campaign=get(handles.SourceDir,'String'); |
---|
608 | % end |
---|
609 | % handles.output=[]; |
---|
610 | % handles.output.Campaign=Campaign; |
---|
611 | % Experiment=get(handles.ListExperiments,'String'); |
---|
612 | % IndicesExp=get(handles.ListExperiments,'Value'); |
---|
613 | % if ~isequal(IndicesExp,1)% if first element ('*') selected all the experiments are selected |
---|
614 | % Experiment=Experiment(IndicesExp);% use the selection of the list of experiments |
---|
615 | % end |
---|
616 | % Experiment=regexprep(Experiment,'^\+/','');% remove the +/ used to mark dir |
---|
617 | % Device=get(handles.DataSeries,'String'); |
---|
618 | % Value=get(handles.DataSeries,'Value'); |
---|
619 | % Device=Device(Value); |
---|
620 | % Device=regexprep(Device,'^\+/','');% remove the +/ used to mark dir |
---|
621 | % Device=regexprep(Device,'^~','');% remove the ~ used to mark symbolic link |
---|
622 | % handles.output.Experiment=Experiment; |
---|
623 | % handles.output.DataSeries=Device; |
---|
624 | % guidata(hObject, handles);% Update handles structure |
---|
625 | % uiresume(handles.browse_data); |
---|
626 | % drawnow |
---|
627 | |
---|
628 | %------------------------------------------------------------------------ |
---|
629 | % --- Executes on button press in HELP. |
---|
630 | function HELP_Callback(hObject, eventdata, handles) |
---|
631 | path_to_uvmat=which ('uvmat');% check the path of uvmat |
---|
632 | pathelp=fileparts(path_to_uvmat); |
---|
633 | helpfile=fullfile(pathelp,'UVMAT_DOC','uvmat_doc.html'); |
---|
634 | if isempty(dir(helpfile)), msgbox_uvmat('ERROR','Please put the help file uvmat_doc.html in the directory UVMAT/UVMAT_DOC') |
---|
635 | else |
---|
636 | web([helpfile '#dataview']) |
---|
637 | end |
---|
638 | |
---|
639 | %------------------------------------------------------------------------ |
---|
640 | % --- Executes when user attempts to close browse_data. |
---|
641 | %------------------------------------------------------------------------ |
---|
642 | function closefcn(gcbo, eventdata) |
---|
643 | |
---|
644 | hseries=findobj(allchild(0),'Tag','series'); |
---|
645 | if ~isempty(hseries) |
---|
646 | hreplicate=findobj(hseries,'Tag','Replicate'); |
---|
647 | set(hreplicate,'Value',0) |
---|
648 | end |
---|
649 | hcalib=findobj(allchild(0),'Tag','geometry_calib'); |
---|
650 | if ~isempty(hcalib) |
---|
651 | hreplicate=findobj(hcalib,'Tag','Replicate'); |
---|
652 | set(hreplicate,'Value',0) |
---|
653 | end |
---|
654 | |
---|
655 | % %------------------------------------------------------------------------ |
---|
656 | % % --- Executes on key press over figure1 with no controls selected. |
---|
657 | % %------------------------------------------------------------------------ |
---|
658 | % function browse_data_KeyPressFcn(hObject, eventdata, handles) |
---|
659 | |
---|
660 | % % Check for "enter" or "escape" |
---|
661 | % if isequal(get(hObject,'CurrentKey'),'escape') |
---|
662 | % % User said no by hitting escape |
---|
663 | % handles.output = 'Cancel'; |
---|
664 | % |
---|
665 | % % Update handles structure |
---|
666 | % guidata(hObject, handles); |
---|
667 | % |
---|
668 | % uiresume(handles.browse_data); |
---|
669 | % end |
---|
670 | % if isequal(get(hObject,'CurrentKey'),'return') |
---|
671 | % uiresume(handles.browse_data); |
---|
672 | % end |
---|
673 | |
---|
674 | |
---|
675 | % --- Executes on button press in Up. |
---|
676 | function Down_Callback(hObject, eventdata, handles) |
---|
677 | SourceDir=get(handles.SourceDir,'String'); |
---|
678 | ListExperiments=get(handles.ListExperiments,'String'); |
---|
679 | list_val=get(handles.ListExperiments,'Value'); |
---|
680 | if ischar(ListExperiments) |
---|
681 | Exp=ListExperiments; |
---|
682 | else |
---|
683 | Exp=ListExperiments{list_val(1)}; |
---|
684 | end |
---|
685 | Exp=regexprep(Exp,'^\+/',''); |
---|
686 | SourceDirNew=fullfile(SourceDir,Exp); |
---|
687 | set(handles.SourceDir,'String',SourceDirNew);% New SourceDir |
---|
688 | ListDevices=get(handles.ListDevices,'String'); |
---|
689 | DeviceIndices=get(handles.ListDevices,'Value'); |
---|
690 | set(handles.ListExperiments,'String',ListDevices);%replace Experiments by Devices |
---|
691 | set(handles.ListExperiments,'Value',DeviceIndices);%replace Experiments by Devices |
---|
692 | DataSeries=get(handles.DataSeries,'String'); |
---|
693 | list_val=get(handles.DataSeries,'Value'); |
---|
694 | set(handles.ListDevices,'String',DataSeries);%replace Devices by DataSeries |
---|
695 | set(handles.ListDevices,'Value',list_val);%replace Devices by DataSeries |
---|
696 | |
---|
697 | [ListFiles,indices]=list_dir_3(SourceDirNew,ListDevices(DeviceIndices),DataSeries(list_val),[],0); |
---|
698 | set(handles.DataSeries,'String',ListFiles) |
---|
699 | set(handles.DataSeries,'Value',indices)% initialise the menu selection with the folder defined by the input |
---|
700 | |
---|
701 | |
---|
702 | % --- Executes on button press in Down. |
---|
703 | function Up_Callback(hObject, eventdata, handles) |
---|
704 | SourceDir=get(handles.SourceDir,'String'); |
---|
705 | [SourceDir,Exp]=fileparts(SourceDir); |
---|
706 | set(handles.SourceDir,'String',SourceDir) |
---|
707 | |
---|
708 | % set(handles.ListExperiments,'Value',indices) |
---|
709 | %[ListFiles,indices]=list_dir_1(SourceDir,Exp); |
---|
710 | % set(handles.ListExperiments,'String',ListFiles) |
---|
711 | % set(handles.ListExperiments,'Value',indices) |
---|
712 | ListDevices=get(handles.ListDevices,'String'); |
---|
713 | DeviceIndices=get(handles.ListDevices,'Value'); |
---|
714 | set(handles.DataSeries,'String',ListDevices); |
---|
715 | set(handles.DataSeries,'Value',DeviceIndices); |
---|
716 | |
---|
717 | ListExperiments=get(handles.ListExperiments,'String'); |
---|
718 | ExpIndices=get(handles.ListExperiments,'Value'); |
---|
719 | set(handles.ListDevices,'String',ListExperiments); |
---|
720 | set(handles.ListDevices,'Value',ExpIndices); |
---|
721 | |
---|
722 | set(handles.ListExperiments,'String',{['+/' Exp]}) |
---|
723 | set(handles.ListExperiments,'Value',1) |
---|
724 | |
---|
725 | % ListExperiments=get(handles.ListExperiments,'String'); |
---|
726 | % list_val=get(handles.ListExperiments,'Value'); |
---|
727 | % SourceFolder=regexprep(ListExperiments{list_val(1)},'+',''); |
---|
728 | % set(handles.SourceDir,'String',fullfile(SourceDir,SourceFolder)) |
---|
729 | % DataSeries=get(handles.DataSeries,'String'); |
---|
730 | % ValueDevice=get(handles.DataSeries,'Value'); |
---|
731 | % set(handles.ListExperiments,'String',DataSeries) |
---|
732 | % set(handles.ListExperiments,'Value',ValueDevice) |
---|
733 | % ListExperiments_Callback(hObject, [], handles) |
---|
734 | |
---|
735 | |
---|
736 | % % --- Executes on selection change in DataSeries. |
---|
737 | % function DataSeries_Callback(hObject, eventdata, handles) |
---|
738 | % SourceDir=get(handles.SourceDir,'String'); |
---|
739 | % ListData=get(handles.DataSeries,'String'); |
---|
740 | % Folder=ListData{get(handles.DataSeries,'Value')}; |
---|
741 | % if ~isempty(regexp(Folder,'^\+/'))% if a folder is selected |
---|
742 | % Folder=regexprep(Folder,'\+/',''); |
---|
743 | % ListExperiments=get(handles.ListExperiments,'String'); |
---|
744 | % list_val=get(handles.ListExperiments,'Value'); |
---|
745 | % for iexp=1:numel(list_val) |
---|
746 | % ExpName=regexprep(ListExperiments{list_val(iexp)},'\+/',''); |
---|
747 | % FullName=fullfile(SourceDir,ExpName,Folder); |
---|
748 | % dd=dir(FullName); |
---|
749 | % check_sub=1; |
---|
750 | % for idir=1:numel(dd) |
---|
751 | % ListData{ilist}=dd(ilist).name; |
---|
752 | % if dd(ilist).isdir && ~strcmp(dd(ilist).name,'.')&& ~strcmp(dd(ilist).name,'..')&& isempty(regexp(dd(ilist).name,'^_LOG'))... |
---|
753 | % && isempty(regexp(dd(ilist).name,'^_LOG'))&& isempty(regexp(dd(ilist).name,'^_XML')) |
---|
754 | % check_sub=1; |
---|
755 | % ListData{ilist}=['+/' dd(ilist).name]; |
---|
756 | % end |
---|
757 | % end |
---|
758 | % if check_sub |
---|
759 | % set(handles.ListDevices,'String',ListData); |
---|
760 | % set(handles.ListDevices,'Visible','on'); |
---|
761 | % set(handles.DataSeries,'String',ListData) |
---|
762 | % break |
---|
763 | % end |
---|
764 | % end |
---|
765 | % end |
---|
766 | |
---|
767 | % % --- Executes on button press in CheckDevices. |
---|
768 | % function CheckDevices_Callback(hObject, eventdata, handles) |
---|
769 | % if get(handles.CheckDevices,'Value') |
---|
770 | % set(handles.ListDevices,'Visible','on') |
---|
771 | % ListDevices=get(handles.DataSeries,'String'); |
---|
772 | % Index=get(handles.DataSeries,'Value'); |
---|
773 | % set(handles.ListDevices,'String',ListDevices) |
---|
774 | % set(handles.ListDevices,'Value',Index) |
---|
775 | % set(handles.DataSeries,'Value',1) |
---|
776 | % if strcmp(get(handles.MirrorDir,'Visible'),'on') |
---|
777 | % MirrorPath=get(handles.MirrorDir,'String'); |
---|
778 | % else |
---|
779 | % MirrorPath=get(handles.SourceDir,'String'); |
---|
780 | % end |
---|
781 | % IndexExperiment=get(handles.ListExperiments,'Value'); |
---|
782 | % ListExperiment=get(handles.ListExperiments,'String'); |
---|
783 | % Experiment=ListExperiment{get(handles.ListExperiments,'Value')}; |
---|
784 | % Experiment=regexprep(Experiment,'^\+/','');% remove the +/ used to mark dir |
---|
785 | % Experiment=regexprep(Experiment,'^~','');% remove the ~ used to mark symbolic link |
---|
786 | % Device=regexprep(ListDevices{Index},'^\+/','');% remove the +/ used to mark dir |
---|
787 | % Device=regexprep(Device,'^~','');% remove the ~ used to mark symbolic link |
---|
788 | % DataSeries=dir(fullfile(MirrorPath,Experiment,Device)); |
---|
789 | % DataSeriesCell=struct2cell(DataSeries); |
---|
790 | % set(handles.DataSeries,'String',DataSeriesCell(1,:)') |
---|
791 | % else |
---|
792 | % ListDevices=get(handles.ListDevices,'String'); |
---|
793 | % Index=get(handles.ListDevices,'Value'); |
---|
794 | % set(handles.ListDevices,'Visible','off') |
---|
795 | % set(handles.DataSeries,'String',ListDevices) |
---|
796 | % set(handles.DataSeries,'Value',Index) |
---|
797 | % end |
---|
798 | |
---|
799 | |
---|
800 | % --- Executes when user attempts to close browse_data. |
---|
801 | function browse_data_CloseRequestFcn(hObject, eventdata, handles) |
---|
802 | % hObject handle to browse_data (see GCBO) |
---|
803 | % eventdata reserved - to be defined in a future version of MATLAB |
---|
804 | % handles structure with handles and user data (see GUIDATA) |
---|
805 | |
---|
806 | % Hint: delete(hObject) closes the figure |
---|
807 | delete(hObject); |
---|