source: trunk/src/series/check_data_files.m @ 551

Last change on this file since 551 was 478, checked in by sommeria, 12 years ago

series fcts updated to fit with new waitbar fct and background run mode, and various bug repairs

File size: 9.1 KB
[447]1%%'check_files': check the existence, type and status of the files selected by series.fig
[447]3% function GUI_input=check_data_files(Param)
[447]5%%%%%%%%%%% GENERAL TO ALL SERIES ACTION FCTS %%%%%%%%%%%%%%%%%%%%%%%%%%%
7% GUI_input=list of options in the GUI series.fig needed for the function
[447]10% In run mode, the input parameters are given as a Matlab structure Param copied from the GUI series.
11% In batch mode, Param is the name of the corresponding xml file containing the same information
12% In the absence of input (as activated when the current Action is selected
13% in series), the function ouput GUI_input set the activation of the needed GUI elements
[447]15% Param contains the elements:(use the menu bar command 'export/GUI config' in series to see the current structure Param)
16%    .InputTable: cell of input file names, (several lines for multiple input)
17%                      each line decomposed as {RootPath,SubDir,Rootfile,NomType,Extension}
18%    .OutputSubDir: name of the subdirectory for data outputs
19%    .OutputDir: directory for data outputs, including path
20%    .Action: .ActionName: name of the current activated function
21%             .ActionPath:   path of the current activated function
22%    .IndexRange: set the file or frame indices on which the action must be performed
23%    .FieldTransform: .TransformName: name of the selected transform function
24%                     .TransformPath:   path  of the selected transform function
25%                     .TransformHandle: corresponding function handle
26%    .InputFields: sub structure describing the input fields withfields
27%              .FieldName: name of the field
28%              .VelType: velocity type
29%              .FieldName_1: name of the second field in case of two input series
30%              .VelType_1: velocity type of the second field in case of two input series
31%    .ProjObject: %sub structure describing a projection object (read from ancillary GUI set_object)
[457]34function ParamOut=check_data_files(Param)
36%% set the input elements needed on the GUI series when the action is selected in the menu ActionName
37if ~exist('Param','var') % case with no input parameter
[457]38    ParamOut={'NbViewMax';'';...% max nbre of input file series (default='' , no limitation)
[447]39        'AllowInputSort';'off';...% allow alphabetic sorting of the list of input files (options 'off'/'on', 'off' by default)
[330]40        'NbSlice';'on'; ...%nbre of slices ('off' by default)
[447]41        'VelType';'off';...% menu for selecting the velocity type (options 'off'/'one'/'two',  'off' by default)
42        'FieldName';'off';...% menu for selecting the field (s) in the input file(options 'off'/'one'/'two', 'off' by default)
43        'FieldTransform'; 'off';...%can use a transform function
44        'ProjObject';'off';...%can use projection object(option 'off'/'on',
45        'Mask';'off';...%can use mask option   (option 'off'/'on', 'off' by default)
46        'OutputDirExt';'';...%set the output dir extension
[330]47               ''};
[447]48        return
[478]51%%%%%%%%%%%%  STANDARD PART  %%%%%%%%%%%%
52%% select different modes,  RUN, parameter input, BATCH
[447]53% BATCH  case: read the xml file for batch case
[478]54if ischar(Param)
55        Param=xml2struct(Param);
56        checkrun=0;
57% RUN case: parameters introduced as the input structure Param
59    if isfield(Param,'Specific')&& strcmp(Param.Specific,'?')
60        checkrun=1;% will only search interactive input parameters (preparation of BATCH mode)
61    else
62        checkrun=2; % indicate the RUN option is used
63    end
[374]64    hseries=guidata(Param.hseries);%handles of the GUI series
[478]66ParamOut=Param; %default output
67%OutputDir=[Param.OutputSubDir Param.OutputDirExt];NO OUTPUT FILE
[447]69%% root input file(s) and type
77% The cell array filecell is the list of input file names, while
78% filecell{iview,fileindex}:
79%        iview: line in the table corresponding to a given file series
80%        fileindex: file index within  the file series,
81% i1_series(iview,ref_j,ref_i)... are the corresponding arrays of indices i1,i2,j1,j2, depending on the input line iview and the two reference indices ref_i,ref_j
82% i1_series(iview,fileindex) expresses the same indices as a 1D array in file indices
[478]85if isfield(Param.IndexRange,'NbSlice')&&~isempty(Param.IndexRange.NbSlice)
[447]86    NbSlice=Param.IndexRange.NbSlice;
[455]88nbview=numel(i1_series);%number of input file series (lines in InputTable)
[478]89nbfield_j=size(i1_series{1},1); %nb of fields for the j index (bursts or volume slices)
90nbfield_i=size(i1_series{1},2); %nb of fields for the i index
91nbfield=nbfield_j*nbfield_i; %total number of fields
92nbfield_i=floor(nbfield/NbSlice);%total number of  indexes in a slice (adjusted to an integer number of slices)
93nbfield=nbfield_i*NbSlice; %total number of fields after adjustement
[447]95%determine the file type on each line from the first input file
98for iview=1:nbview
99    [FileType{iview},FileInfo{iview},Object{iview}]=get_file_type(filecell{iview,1});
100    CheckImage{iview}=~isempty(find(strcmp(FileType{iview},ImageTypeOptions)));% =1 for images
101    CheckNc{iview}=~isempty(find(strcmp(FileType{iview},NcTypeOptions)));% =1 for netcdf files
[330]105for iview=1:nbview
[455]106    if isequal(FileType{iview},'mmreader')||isequal(FileType{iview},'video')||isequal(FileType{iview},'multimage')
[470]107        [tild,FileInfo]=get_file_type(filecell{iview,1});
108        Tabchar{1}=filecell{iview,1};%info.Filename;
109        Tabchar{2}=FileInfo.FileModDate;
110        Tabchar{3}=[num2str(FileInfo.FramesPerSecond) ' frames/s '];
111        Tabchar{4}=FileInfo.ImageType;
112        Tabchar{5}=['  compression' FileInfo.VideoCompression];
113        Tabchar{6}=[ 'quality ' num2str(FileInfo.Quality)];   
[330]114    else
115        Tabchar={};
116        %LOOP ON SLICES
117        for i_slice=1:NbSlice
[447]118            index_slice=i_slice:NbSlice:nbfield;
[340]119            filefound={};
[451]120            datnum=zeros(1,nbfield_j);
[447]121            for ifile=1:nbfield_i
[330]122                stopstate=get(hseries.RUN,'BusyAction');
123                if isequal(stopstate,'queue')% enable STOP command
[478]124                    update_waitbar(hseries.Waitbar,ifile/nbfield_i)         
[447]125                    file=filecell{iview,index_slice(ifile)};
[330]126                    [Path,Name,ext]=fileparts(file);
127                    detect=exist(file,'file'); % check the existence of the file
128                    if detect==0
129                        lastfield='not found';
130                    else
131                        datfile=dir(file);
132                        if isfield(datfile,'datenum')
133                            datnum(ifile)=datfile.datenum;
[451]134                            filefound(ifile)={};
135                        end                     
[330]136                        lastfield='';
[470]137                        [FileType{iview},FileInfo,Object]=get_file_type(file);
138                        if strcmp(FileType{iview},'civx')||strcmp(FileType{iview},'civdata')
[377]139                            if isfield(FileInfo,'CivStage')
140                            liststage={'civ1','fix1','patch1','civ2','fix2','patch2'};
141                            lastfield=liststage{FileInfo.CivStage};
142                            end
143                        end
[470]144                        lastfield=[FileType{iview} ', ' lastfield];                   
[330]145                    end
146                    Tabchar(1,i_slice)={['slice #' num2str(i_slice)]};
[447]147                    Tabchar(ifile+1,i_slice)={[file '...' lastfield]};
[330]148                end
149            end
150        end
[340]151        if isempty(filefound)
[330]152            if NbSlice>1
153                message=['no set of ' num2str(NbSlice) ' (NbSlices) files found'];
154            else
155                 message='no file found';
156            end
157        else
158            datnum=datnum(find(datnum));%keep the non zero values corresponding to existing files
[451]159            filefound=filefound(find(datnum));
[330]160            [first,ind]=min(datnum);
161            [last,indlast]=max(datnum);
[451]162            message={['oldest modification:  ' filefound{ind} ' : ' datestr(first)];...
163                ['latest modification:  ' filefound{indlast} ' : ' datestr(last)]};
[330]164        end
165        if ~isempty(Tabchar)
[447]166          Tabchar=reshape(Tabchar,NbSlice*(nbfield_i+1),1);
[330]167        end
168    end
169    hfig=figure(iview);
170    clf
171    if iview>1
172        pos=get(iview-1,'Position');
173        pos(1)=pos(1)+(iview-1)*pos(1)/nbview;
174        set(hfig,'Position',pos)
175    end
[427]176    set(hfig,'name',['check_data_files:view= ' num2str(iview)])
177    set(hfig,'MenuBar','none')% suppress the menu bar
178    set(hfig,'NumberTitle','off')%suppress the fig number in the title
[361]179    h=uicontrol('Style','listbox', 'Position', [20 20 500 300], 'String', Tabchar, 'Callback', {'open_uvmat'});
[330]180    hh=uicontrol('Style','listbox', 'Position', [20 340 500 40], 'String', message);
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