Changeset 478 for trunk/src/series/check_data_files.m

Timestamp:

Jun 26, 2012, 8:41:27 AM (13 years ago)

Author:

sommeria

Message:

series fcts updated to fit with new waitbar fct and background run mode, and various bug repairs

File:

• trunk/src/series/check_data_files.m (modified) (3 diffs)

trunk/src/series/check_data_files.m

@@ -49 +49 @@
 end
 
-%% get input parameters, file names and indices
+%%%%%%%%%%%%  STANDARD PART  %%%%%%%%%%%%
+%% select different modes,  RUN, parameter input, BATCH
 % BATCH  case: read the xml file for batch case
+if ischar(Param)
+        Param=xml2struct(Param);
+        checkrun=0;
+% RUN case: parameters introduced as the input structure Param
+else
+    if isfield(Param,'Specific')&& strcmp(Param.Specific,'?')
+        checkrun=1;% will only search interactive input parameters (preparation of BATCH mode)
+    else
+        checkrun=2; % indicate the RUN option is used
+    end
+    hseries=guidata(Param.hseries);%handles of the GUI series
+end
 ParamOut=Param; %default output
-if ischar(Param) && ~isempty(find(regexp('Param','.xml$')))
-    Param=xml2struct(Param);
-    checkrun=0;
-% RUN case: parameters introduced as the input structure Param  
-else 
-    hseries=guidata(Param.hseries);%handles of the GUI series
-    WaitbarPos=get(hseries.waitbar_frame,'Position');%position of the waitbar on the GUI series
-    checkrun=1; % indicate the RUN option is used
-end
-% get the set of input file names (cell array filecell), and the lists of
-% input file or frame indices i1_series,i2_series,j1_series,j2_series
-[filecell,i1_series,i2_series,j1_series,j2_series]=get_file_series(Param);
-% filecell{iview,fileindex}: cell array representing the list of file names
-%        iview: line in the table corresponding to a given file series
-%        fileindex: file index within  the file series, 
-% i1_series(iview,ref_j,ref_i)... are the corresponding arrays of indices i1,i2,j1,j2, depending on the input line iview and the two reference indices ref_i,ref_j 
-% i1_series(iview,fileindex) expresses the same indices as a 1D array in file indices
-% set of frame indices used for movie or multimage input 
-if ~isempty(j1_series)
-    frame_index=j1_series;
-else
-    frame_index=i1_series;
-end
-
+%OutputDir=[Param.OutputSubDir Param.OutputDirExt];NO OUTPUT FILE
+    
 %% root input file(s) and type
 RootPath=Param.InputTable(:,1);
@@ -82 +73 @@
 NomType=Param.InputTable(:,4);
 FileExt=Param.InputTable(:,5);
-
-% numbers of slices and file indices
+[filecell,i1_series,i2_series,j1_series,j2_series]=get_file_series(Param);
+%%%%%%%%%%%%
+% The cell array filecell is the list of input file names, while
+% filecell{iview,fileindex}:
+%        iview: line in the table corresponding to a given file series
+%        fileindex: file index within  the file series, 
+% i1_series(iview,ref_j,ref_i)... are the corresponding arrays of indices i1,i2,j1,j2, depending on the input line iview and the two reference indices ref_i,ref_j 
+% i1_series(iview,fileindex) expresses the same indices as a 1D array in file indices
+%%%%%%%%%%%%
 NbSlice=1;%default
-if isfield(Param.IndexRange,'NbSlice')
+if isfield(Param.IndexRange,'NbSlice')&&~isempty(Param.IndexRange.NbSlice)
     NbSlice=Param.IndexRange.NbSlice;
 end
 nbview=numel(i1_series);%number of input file series (lines in InputTable)
-nbfield_j=size(i1_series{1},1); %nb of consecutive fields at each level(burst
-nbfield=nbfield_j*size(i1_series{1},2); %total number of files or frames
-nbfield_i=floor(nbfield/NbSlice);%total number of i indexes (adjusted to an integer number of slices)
-nbfield=nbfield_i*nbfield_j; %total number of fields after adjustement
+nbfield_j=size(i1_series{1},1); %nb of fields for the j index (bursts or volume slices)
+nbfield_i=size(i1_series{1},2); %nb of fields for the i index
+nbfield=nbfield_j*nbfield_i; %total number of fields
+nbfield_i=floor(nbfield/NbSlice);%total number of  indexes in a slice (adjusted to an integer number of slices) 
+nbfield=nbfield_i*NbSlice; %total number of fields after adjustement
 
 %determine the file type on each line from the first input file 
@@ -123 +122 @@
                 stopstate=get(hseries.RUN,'BusyAction');
                 if isequal(stopstate,'queue')% enable STOP command
-                    update_waitbar(hseries.waitbar_frame,WaitbarPos,ifile/nbfield_i)         
+                    update_waitbar(hseries.Waitbar,ifile/nbfield_i)         
                     file=filecell{iview,index_slice(ifile)};
                     [Path,Name,ext]=fileparts(file);