source: trunk/src/series/check_data_files.m @ 592

Last change on this file since 592 was 592, checked in by sommeria, 8 years ago

commit the series fcts with the new form

File size: 10.1 KB
Line 
1%%'check_data_files': check the existence, type and status of the files selected by series.fig
2%------------------------------------------------------------------------
3% function GUI_input=check_data_files(Param)
4%
5%%%%%%%%%%% GENERAL TO ALL SERIES ACTION FCTS %%%%%%%%%%%%%%%%%%%%%%%%%%%
6%OUTPUT
7% GUI_input=list of options in the GUI series.fig needed for the function
8%
9%INPUT:
10% In run mode, the input parameters are given as a Matlab structure Param copied from the GUI series.
11% In batch mode, Param is the name of the corresponding xml file containing the same information
12% In the absence of input (as activated when the current Action is selected
13% in series), the function ouput GUI_input set the activation of the needed GUI elements
14%
15% Param contains the elements:(use the menu bar command 'export/GUI config' in series to see the current structure Param)
16%    .InputTable: cell of input file names, (several lines for multiple input)
17%                      each line decomposed as {RootPath,SubDir,Rootfile,NomType,Extension}
18%    .OutputSubDir: name of the subdirectory for data outputs
19%    .OutputDir: directory for data outputs, including path
20%    .Action: .ActionName: name of the current activated function
21%             .ActionPath:   path of the current activated function
22%    .IndexRange: set the file or frame indices on which the action must be performed
23%    .FieldTransform: .TransformName: name of the selected transform function
24%                     .TransformPath:   path  of the selected transform function
25%                     .TransformHandle: corresponding function handle
26%    .InputFields: sub structure describing the input fields withfields
27%              .FieldName: name of the field
28%              .VelType: velocity type
29%              .FieldName_1: name of the second field in case of two input series
30%              .VelType_1: velocity type of the second field in case of two input series
31%    .ProjObject: %sub structure describing a projection object (read from ancillary GUI set_object)
32%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
33
34function ParamOut=check_data_files(Param)
35
36% %% set the input elements needed on the GUI series when the action is selected in the menu ActionName
37% if ~exist('Param','var') % case with no input parameter
38%     ParamOut={'NbViewMax';'';...% max nbre of input file series (default='' , no limitation)
39%         'AllowInputSort';'off';...% allow alphabetic sorting of the list of input files (options 'off'/'on', 'off' by default)
40%         'NbSlice';'on'; ...%nbre of slices ('off' by default)
41%         'VelType';'off';...% menu for selecting the velocity type (options 'off'/'one'/'two',  'off' by default)
42%         'FieldName';'off';...% menu for selecting the field (s) in the input file(options 'off'/'one'/'two', 'off' by default)
43%         'FieldTransform'; 'off';...%can use a transform function
44%         'ProjObject';'off';...%can use projection object(option 'off'/'on',
45%         'Mask';'off';...%can use mask option   (option 'off'/'on', 'off' by default)
46%         'OutputDirExt';'';...%set the output dir extension
47%                ''};
48%         return
49% end
50%% input preparation mode (no RUN)
51if isstruct(Param) && isequal(Param.Action.RUN,0)
52    ParamOut.AllowInputSort='off';...% allow alphabetic sorting of the list of input file SubDir (options 'off'/'on', 'off' by default)
53    ParamOut.WholeIndexRange='off';...% prescribes the file index ranges from min to max (options 'off'/'on', 'off' by default)
54    ParamOut.NbSlice='on'; ...%nbre of slices ('off' by default)
55    ParamOut.VelType='off';...% menu for selecting the velocity type (options 'off'/'one'/'two',  'off' by default)
56    ParamOut.FieldName='off';...% menu for selecting the field (s) in the input file(options 'off'/'one'/'two', 'off' by default)
57    ParamOut.FieldTransform = 'off';...%can use a transform function
58    ParamOut.ProjObject='off';...%can use projection object(option 'off'/'on',
59    ParamOut.Mask='off';...%can use mask option   (option 'off'/'on', 'off' by default)
60    ParamOut.OutputDirExt='';%set the output dir extension (blank=no output dir)
61return
62end
63%%%%%%%%%%%%  STANDARD PART  %%%%%%%%%%%%
64%% select different modes,  RUN, parameter input, BATCH
65% BATCH  case: read the xml file for batch case
66if ischar(Param)
67        Param=xml2struct(Param);
68        checkrun=0;
69% RUN case: parameters introduced as the input structure Param
70else
71    if isfield(Param,'Specific')&& strcmp(Param.Specific,'?')
72        checkrun=1;% will only search interactive input parameters (preparation of BATCH mode)
73    else
74        checkrun=2; % indicate the RUN option is used
75    end
76    hseries=guidata(Param.hseries);%handles of the GUI series
77end
78ParamOut=Param; %default output
79%OutputDir=[Param.OutputSubDir Param.OutputDirExt];NO OUTPUT FILE
80   
81%% root input file(s) and type
82RootPath=Param.InputTable(:,1);
83RootFile=Param.InputTable(:,3);
84SubDir=Param.InputTable(:,2);
85NomType=Param.InputTable(:,4);
86FileExt=Param.InputTable(:,5);
87[filecell,i1_series,i2_series,j1_series,j2_series]=get_file_series(Param);
88if isempty(i1_series)
89    return
90end
91%%%%%%%%%%%%
92% The cell array filecell is the list of input file names, while
93% filecell{iview,fileindex}:
94%        iview: line in the table corresponding to a given file series
95%        fileindex: file index within  the file series,
96% i1_series(iview,ref_j,ref_i)... are the corresponding arrays of indices i1,i2,j1,j2, depending on the input line iview and the two reference indices ref_i,ref_j
97% i1_series(iview,fileindex) expresses the same indices as a 1D array in file indices
98%%%%%%%%%%%%
99NbSlice=1;%default
100if isfield(Param.IndexRange,'NbSlice')&&~isempty(Param.IndexRange.NbSlice)
101    NbSlice=Param.IndexRange.NbSlice;
102end
103nbview=numel(i1_series);%number of input file series (lines in InputTable)
104nbfield_j=size(i1_series{1},1); %nb of fields for the j index (bursts or volume slices)
105nbfield_i=size(i1_series{1},2); %nb of fields for the i index
106nbfield=nbfield_j*nbfield_i; %total number of fields
107nbfield_i=floor(nbfield/NbSlice);%total number of  indexes in a slice (adjusted to an integer number of slices)
108nbfield=nbfield_i*NbSlice; %total number of fields after adjustement
109
110%determine the file type on each line from the first input file
111ImageTypeOptions={'image','multimage','mmreader','video'};
112NcTypeOptions={'netcdf','civx','civdata'};
113for iview=1:nbview
114    [FileType{iview},FileInfo{iview},Object{iview}]=get_file_type(filecell{iview,1});
115    CheckImage{iview}=~isempty(find(strcmp(FileType{iview},ImageTypeOptions)));% =1 for images
116    CheckNc{iview}=~isempty(find(strcmp(FileType{iview},NcTypeOptions)));% =1 for netcdf files
117end
118
119%% MAIN LOOP ON VIEWS (INPUT LINES)
120for iview=1:nbview
121    if isequal(FileType{iview},'mmreader')||isequal(FileType{iview},'video')||isequal(FileType{iview},'multimage')
122        [tild,FileInfo]=get_file_type(filecell{iview,1});
123        Tabchar{1}=filecell{iview,1};%info.Filename;
124        Tabchar{2}=FileInfo.FileModDate;
125        Tabchar{3}=[num2str(FileInfo.FramesPerSecond) ' frames/s '];
126        Tabchar{4}=FileInfo.ImageType;
127        Tabchar{5}=['  compression' FileInfo.VideoCompression];
128        Tabchar{6}=[ 'quality ' num2str(FileInfo.Quality)];   
129    else
130        Tabchar={};
131        %LOOP ON SLICES
132        for i_slice=1:NbSlice
133            index_slice=i_slice:NbSlice:nbfield;
134            filefound={};
135            datnum=zeros(1,nbfield_j);
136            for ifile=1:nbfield_i
137                stopstate=get(hseries.RUN,'BusyAction');
138                if isequal(stopstate,'queue')% enable STOP command
139                    update_waitbar(hseries.Waitbar,ifile/nbfield_i)         
140                    file=filecell{iview,index_slice(ifile)};
141                    [Path,Name,ext]=fileparts(file);
142                    detect=exist(file,'file'); % check the existence of the file
143                    if detect==0
144                        lastfield='not found';
145                    else
146                        datfile=dir(file);
147                        if isfield(datfile,'datenum')
148                            datnum(ifile)=datfile.datenum;
149                            filefound(ifile)={datfile.name};
150                        end                     
151                        lastfield='';
152                        [FileType{iview},FileInfo,Object]=get_file_type(file);
153                        if strcmp(FileType{iview},'civx')||strcmp(FileType{iview},'civdata')
154                            if isfield(FileInfo,'CivStage')
155                            liststage={'civ1','fix1','patch1','civ2','fix2','patch2'};
156                            lastfield=liststage{FileInfo.CivStage};
157                            end
158                        end
159                        lastfield=[FileType{iview} ', ' lastfield];                   
160                    end
161                    Tabchar(1,i_slice)={['slice #' num2str(i_slice)]};
162                    Tabchar(ifile+1,i_slice)={[file '...' lastfield]};
163                end
164            end
165        end
166        if isempty(filefound)
167            if NbSlice>1
168                message=['no set of ' num2str(NbSlice) ' (NbSlices) files found'];
169            else
170                 message='no file found';
171            end
172        else
173            datnum=datnum(find(datnum));%keep the non zero values corresponding to existing files
174            filefound=filefound(find(datnum));
175            [first,ind]=min(datnum);
176            [last,indlast]=max(datnum);
177            message={['oldest modification:  ' filefound{ind} ' : ' datestr(first)];...
178                ['latest modification:  ' filefound{indlast} ' : ' datestr(last)]};
179        end
180        if ~isempty(Tabchar)
181          Tabchar=reshape(Tabchar,NbSlice*(nbfield_i+1),1);
182        end
183    end
184    hfig=figure(iview);
185    clf
186    if iview>1
187        pos=get(iview-1,'Position');
188        pos(1)=pos(1)+(iview-1)*pos(1)/nbview;
189        set(hfig,'Position',pos)
190    end
191    set(hfig,'name',['check_data_files:view= ' num2str(iview)])
192    set(hfig,'MenuBar','none')% suppress the menu bar
193    set(hfig,'NumberTitle','off')%suppress the fig number in the title
194    h=uicontrol('Style','listbox', 'Position', [20 20 500 300], 'String', Tabchar, 'Callback', {'open_uvmat'});
195    hh=uicontrol('Style','listbox', 'Position', [20 340 500 40], 'String', message);
196end
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