1 | %%'check_data_files': check the existence, type and status of the files selected by series.fig |
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2 | %------------------------------------------------------------------------ |
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3 | % function GUI_input=check_data_files(Param) |
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4 | % |
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5 | %%%%%%%%%%% GENERAL TO ALL SERIES ACTION FCTS %%%%%%%%%%%%%%%%%%%%%%%%%%% |
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6 | %OUTPUT |
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7 | % GUI_input=list of options in the GUI series.fig needed for the function |
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8 | % |
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9 | %INPUT: |
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10 | % In run mode, the input parameters are given as a Matlab structure Param copied from the GUI series. |
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11 | % In batch mode, Param is the name of the corresponding xml file containing the same information |
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12 | % In the absence of input (as activated when the current Action is selected |
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13 | % in series), the function ouput GUI_input set the activation of the needed GUI elements |
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14 | % |
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15 | % Param contains the elements:(use the menu bar command 'export/GUI config' in series to see the current structure Param) |
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16 | % .InputTable: cell of input file names, (several lines for multiple input) |
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17 | % each line decomposed as {RootPath,SubDir,Rootfile,NomType,Extension} |
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18 | % .OutputSubDir: name of the subdirectory for data outputs |
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19 | % .OutputDir: directory for data outputs, including path |
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20 | % .Action: .ActionName: name of the current activated function |
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21 | % .ActionPath: path of the current activated function |
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22 | % .IndexRange: set the file or frame indices on which the action must be performed |
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23 | % .FieldTransform: .TransformName: name of the selected transform function |
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24 | % .TransformPath: path of the selected transform function |
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25 | % .TransformHandle: corresponding function handle |
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26 | % .InputFields: sub structure describing the input fields withfields |
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27 | % .FieldName: name of the field |
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28 | % .VelType: velocity type |
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29 | % .FieldName_1: name of the second field in case of two input series |
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30 | % .VelType_1: velocity type of the second field in case of two input series |
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31 | % .ProjObject: %sub structure describing a projection object (read from ancillary GUI set_object) |
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32 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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33 | |
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34 | function ParamOut=check_data_files(Param) |
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35 | |
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36 | %% input preparation mode (no RUN) |
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37 | if isstruct(Param) && isequal(Param.Action.RUN,0) |
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38 | ParamOut.AllowInputSort='off';% allow alphabetic sorting of the list of input file SubDir (options 'off'/'on', 'off' by default) |
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39 | ParamOut.WholeIndexRange='off';% prescribes the file index ranges from min to max (options 'off'/'on', 'off' by default) |
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40 | ParamOut.NbSlice='on';%nbre of slices ('off' by default) |
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41 | ParamOut.VelType='off';% menu for selecting the velocity type (options 'off'/'one'/'two', 'off' by default) |
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42 | ParamOut.FieldName='off';% menu for selecting the field (s) in the input file(options 'off'/'one'/'two', 'off' by default) |
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43 | ParamOut.FieldTransform = 'off';%can use a transform function |
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44 | ParamOut.ProjObject='off';%can use projection object(option 'off'/'on', |
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45 | ParamOut.Mask='off';%can use mask option (option 'off'/'on', 'off' by default) |
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46 | ParamOut.OutputDirExt='';%set the output dir extension (blank=no output dir) |
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47 | return |
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48 | end |
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49 | %%%%%%%%%%%% STANDARD PART %%%%%%%%%%%% |
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50 | |
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51 | %% read input parameters from an xml file if input is a file name (batch mode) |
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52 | checkrun=1; |
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53 | if ischar(Param) |
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54 | Param=xml2struct(Param);% read Param as input file (batch case) |
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55 | checkrun=0; |
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56 | end |
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57 | |
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58 | %% root input file(s) and type |
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59 | RootPath=Param.InputTable(:,1); |
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60 | RootFile=Param.InputTable(:,3); |
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61 | SubDir=Param.InputTable(:,2); |
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62 | NomType=Param.InputTable(:,4); |
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63 | FileExt=Param.InputTable(:,5); |
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64 | [filecell,i1_series,i2_series,j1_series,j2_series]=get_file_series(Param); |
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65 | if isempty(i1_series) |
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66 | return |
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67 | end |
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68 | %%%%%%%%%%%% |
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69 | % The cell array filecell is the list of input file names, while |
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70 | % filecell{iview,fileindex}: |
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71 | % iview: line in the table corresponding to a given file series |
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72 | % fileindex: file index within the file series, |
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73 | % i1_series(iview,ref_j,ref_i)... are the corresponding arrays of indices i1,i2,j1,j2, depending on the input line iview and the two reference indices ref_i,ref_j |
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74 | % i1_series(iview,fileindex) expresses the same indices as a 1D array in file indices |
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75 | %%%%%%%%%%%% |
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76 | NbSlice=1;%default |
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77 | if isfield(Param.IndexRange,'NbSlice')&&~isempty(Param.IndexRange.NbSlice) |
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78 | NbSlice=Param.IndexRange.NbSlice; |
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79 | end |
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80 | nbview=numel(i1_series);%number of input file series (lines in InputTable) |
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81 | nbfield_j=size(i1_series{1},1); %nb of fields for the j index (bursts or volume slices) |
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82 | nbfield_i=size(i1_series{1},2); %nb of fields for the i index |
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83 | nbfield=nbfield_j*nbfield_i; %total number of fields |
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84 | nbfield_i=floor(nbfield/NbSlice);%total number of indexes in a slice (adjusted to an integer number of slices) |
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85 | nbfield=nbfield_i*NbSlice; %total number of fields after adjustement |
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86 | |
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87 | %determine the file type on each line from the first input file |
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88 | ImageTypeOptions={'image','multimage','mmreader','video'}; |
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89 | NcTypeOptions={'netcdf','civx','civdata'}; |
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90 | for iview=1:nbview |
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91 | [FileType{iview},FileInfo{iview},Object{iview}]=get_file_type(filecell{iview,1}); |
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92 | CheckImage{iview}=~isempty(find(strcmp(FileType{iview},ImageTypeOptions)));% =1 for images |
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93 | CheckNc{iview}=~isempty(find(strcmp(FileType{iview},NcTypeOptions)));% =1 for netcdf files |
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94 | end |
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95 | |
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96 | %% MAIN LOOP ON VIEWS (INPUT LINES) |
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97 | for iview=1:nbview |
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98 | if isequal(FileType{iview},'mmreader')||isequal(FileType{iview},'video')||isequal(FileType{iview},'multimage') |
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99 | [tild,FileInfo]=get_file_type(filecell{iview,1}); |
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100 | Tabchar{1}=filecell{iview,1};%info.Filename; |
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101 | Tabchar{2}=FileInfo.FileModDate; |
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102 | Tabchar{3}=[num2str(FileInfo.FramesPerSecond) ' frames/s ']; |
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103 | Tabchar{4}=FileInfo.ImageType; |
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104 | Tabchar{5}=[' compression' FileInfo.VideoCompression]; |
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105 | Tabchar{6}=[ 'quality ' num2str(FileInfo.Quality)]; |
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106 | else |
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107 | Tabchar={}; |
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108 | %LOOP ON SLICES |
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109 | for i_slice=1:NbSlice |
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110 | index_slice=i_slice:NbSlice:nbfield; |
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111 | filefound={}; |
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112 | datnum=zeros(1,nbfield_j); |
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113 | for ifile=1:nbfield_i |
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114 | if checkrun |
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115 | stopstate=get(Param.RUNHandle,'BusyAction'); |
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116 | update_waitbar(Param.WaitbarHandle,ifile/nbfield_i) |
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117 | else |
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118 | stopstate='queue'; |
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119 | end |
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120 | if isequal(stopstate,'queue')% enable STOP command |
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121 | file=filecell{iview,index_slice(ifile)}; |
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122 | [Path,Name,ext]=fileparts(file); |
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123 | detect=exist(file,'file'); % check the existence of the file |
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124 | if detect==0 |
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125 | lastfield='not found'; |
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126 | else |
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127 | datfile=dir(file); |
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128 | if isfield(datfile,'datenum') |
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129 | datnum(ifile)=datfile.datenum; |
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130 | filefound(ifile)={datfile.name}; |
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131 | end |
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132 | lastfield=''; |
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133 | [FileType{iview},FileInfo,Object]=get_file_type(file); |
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134 | if strcmp(FileType{iview},'civx')||strcmp(FileType{iview},'civdata') |
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135 | if isfield(FileInfo,'CivStage') |
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136 | liststage={'civ1','fix1','patch1','civ2','fix2','patch2'}; |
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137 | lastfield=liststage{FileInfo.CivStage}; |
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138 | end |
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139 | end |
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140 | lastfield=[FileType{iview} ', ' lastfield]; |
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141 | end |
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142 | Tabchar(1,i_slice)={['slice #' num2str(i_slice)]}; |
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143 | Tabchar(ifile+1,i_slice)={[file '...' lastfield]}; |
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144 | end |
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145 | end |
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146 | end |
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147 | if isempty(filefound) |
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148 | if NbSlice>1 |
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149 | message=['no set of ' num2str(NbSlice) ' (NbSlices) files found']; |
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150 | else |
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151 | message='no file found'; |
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152 | end |
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153 | else |
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154 | datnum=datnum(find(datnum));%keep the non zero values corresponding to existing files |
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155 | filefound=filefound(find(datnum)); |
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156 | [first,ind]=min(datnum); |
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157 | [last,indlast]=max(datnum); |
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158 | message={['oldest modification: ' filefound{ind} ' : ' datestr(first)];... |
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159 | ['latest modification: ' filefound{indlast} ' : ' datestr(last)]}; |
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160 | end |
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161 | if ~isempty(Tabchar) |
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162 | Tabchar=reshape(Tabchar,NbSlice*(nbfield_i+1),1); |
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163 | end |
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164 | end |
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165 | hfig=figure(iview); |
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166 | clf |
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167 | if iview>1 |
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168 | pos=get(iview-1,'Position'); |
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169 | pos(1)=pos(1)+(iview-1)*pos(1)/nbview; |
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170 | set(hfig,'Position',pos) |
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171 | end |
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172 | set(hfig,'name',['check_data_files:view= ' num2str(iview)]) |
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173 | set(hfig,'MenuBar','none')% suppress the menu bar |
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174 | set(hfig,'NumberTitle','off')%suppress the fig number in the title |
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175 | h=uicontrol('Style','listbox', 'Position', [20 20 500 300], 'String', Tabchar, 'Callback', {'open_uvmat'}); |
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176 | hh=uicontrol('Style','listbox', 'Position', [20 340 500 40], 'String', message); |
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177 | end |
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