[647] | 1 | %'civ_input': function associated with the GUI 'civ_input.fig' to set the input parameters for civ_series |
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[597] | 2 | %------------------------------------------------------------------------ |
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[647] | 3 | % function ParamOut = civ_input(Param) |
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[597] | 4 | % |
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[647] | 5 | % OUPUT: |
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| 6 | % ParamOut: Matlab structure containing the parameters set by the GUI civ_input |
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| 7 | % |
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| 8 | % INPUT: |
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| 9 | % Param: Matlab structure containing the input parameters set by the GUI |
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[810] | 10 | |
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| 11 | %======================================================================= |
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[1126] | 12 | % Copyright 2008-2024, LEGI UMR 5519 / CNRS UGA G-INP, Grenoble, France |
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[810] | 13 | % http://www.legi.grenoble-inp.fr |
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[1127] | 14 | % Joel.Sommeria - Joel.Sommeria (A) univ-grenoble-alpes.fr |
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[647] | 15 | % |
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[597] | 16 | % This file is part of the toolbox UVMAT. |
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| 17 | % |
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| 18 | % UVMAT is free software; you can redistribute it and/or modify |
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[810] | 19 | % it under the terms of the GNU General Public License as published |
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| 20 | % by the Free Software Foundation; either version 2 of the license, |
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| 21 | % or (at your option) any later version. |
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[597] | 22 | % |
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| 23 | % UVMAT is distributed in the hope that it will be useful, |
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| 24 | % but WITHOUT ANY WARRANTY; without even the implied warranty of |
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| 25 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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[810] | 26 | % GNU General Public License (see LICENSE.txt) for more details. |
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| 27 | %======================================================================= |
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| 28 | |
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[597] | 29 | function varargout = civ_input(varargin) |
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| 30 | |
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| 31 | gui_Singleton = 1; |
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| 32 | gui_State = struct('gui_Name', mfilename, ... |
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| 33 | 'gui_Singleton', gui_Singleton, ... |
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| 34 | 'gui_OpeningFcn', @civ_input_OpeningFcn, ... |
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| 35 | 'gui_OutputFcn', @civ_input_OutputFcn, ... |
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| 36 | 'gui_LayoutFcn', [] , ... |
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| 37 | 'gui_Callback', []); |
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| 38 | |
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[598] | 39 | if nargin && ischar(varargin{1}) && ~isempty(regexp(varargin{1},'_Callback$','once')) |
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[597] | 40 | gui_State.gui_Callback = str2func(varargin{1}); |
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| 41 | end |
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| 42 | |
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| 43 | if nargout |
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| 44 | [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); |
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| 45 | else |
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| 46 | gui_mainfcn(gui_State, varargin{:}); |
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| 47 | end |
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| 48 | |
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| 49 | % End initialization code - DO NOT EDIT |
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| 50 | |
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| 51 | %------------------------------------------------------------------------ |
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| 52 | % --- Executes just before civ_input is made visible. |
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| 53 | function civ_input_OpeningFcn(hObject, eventdata, handles, Param) |
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| 54 | %------------------------------------------------------------------------ |
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| 55 | % This function has no output args, see OutputFcn. |
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| 56 | |
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| 57 | %% General settings |
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| 58 | handles.output = Param; |
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| 59 | guidata(hObject, handles); % Update handles structure |
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| 60 | set(hObject,'WindowButtonDownFcn',{'mouse_down'}) % allows mouse action with right button (zoom for uicontrol display) |
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[774] | 61 | set(hObject,'WindowKeyPressFcn',{@keyboard_callback,handles})%set keyboard action function |
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| 62 | set(handles.ref_i,'KeyPressFcn',{@ref_i_KeyPressFcn,handles})%set keyboard action function |
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[851] | 63 | set(handles.ref_j,'KeyPressFcn',{@ref_i_KeyPressFcn,handles})%set keyboard action function |
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[774] | 64 | hseries=findobj(allchild(0),'Tag','series');% find the parent GUI 'series' |
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| 65 | hhseries=guidata(hseries); %handles of the elements in 'series' |
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| 66 | SeriesData=get(hseries,'UserData');% info stored in the GUI series |
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[597] | 67 | |
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[833] | 68 | %% set visibility options depending on the calling function (Param.Action.ActionName): |
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| 69 | switch Param.Action.ActionName |
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| 70 | case 'stereo_civ' |
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| 71 | set(handles.ListCompareMode,'Visible','off') |
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| 72 | set(handles.PairIndices,'Visible','off') |
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| 73 | case 'civ_series' |
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| 74 | set(handles.ListCompareMode,'Visible','on') |
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| 75 | set(handles.PairIndices,'Visible','on') |
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[1148] | 76 | case 'civ_3D' |
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| 77 | set(handles.ListCompareMode,'Visible','on') |
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| 78 | set(handles.PairIndices,'Visible','on') |
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| 79 | set(handles.title_z,'Visible','on') |
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| 80 | set(handles.num_CorrBoxSize_3,'Visible','on') |
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| 81 | set(handles.num_SearchBoxSize_3,'Visible','on') |
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| 82 | set(handles.num_SearchBoxShift_3,'Visible','on') |
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| 83 | set(handles.num_Dz,'Visible','on') |
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| 84 | set(handles.title_Dz,'Visible','on') |
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[833] | 85 | end |
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[599] | 86 | |
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| 87 | %% input file info |
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| 88 | NomTypeInput=Param.InputTable{1,4}; |
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[716] | 89 | FileType='image';%fdefault |
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| 90 | FileInfo=[]; |
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[1143] | 91 | if isfield(SeriesData,'FileInfo') |
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[1033] | 92 | FileType=SeriesData.FileInfo{1}.FileType;% info on the first input file series |
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| 93 | FieldType=SeriesData.FileInfo{1}.FieldType;% info on the first input file series |
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[711] | 94 | else |
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[774] | 95 | set(hhseries.REFRESH,'BackgroundColor',[1 0 1])% indicate that the file input in series needs to be refreshed |
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[711] | 96 | end |
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[599] | 97 | |
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[774] | 98 | %% case of netcdf file as input, read the processing stage and look for corresponding images |
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[599] | 99 | ind_opening=0;%default |
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| 100 | NomTypeNc=''; |
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[851] | 101 | NomTypeImaA=NomTypeInput; |
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| 102 | iview_image=1;%line # for the input images |
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[599] | 103 | switch FileType |
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| 104 | case 'civdata' |
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[603] | 105 | if ~strcmp(Param.Action.ActionName,'civ_series') |
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| 106 | msgbox_uvmat('ERROR','bad input data file: open an image or a nc file from civ_series') |
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[851] | 107 | return |
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[603] | 108 | end |
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[599] | 109 | NomTypeNc=NomTypeInput; |
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[1122] | 110 | ind_opening=SeriesData.FileInfo{1}.CivStage; |
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[599] | 111 | if isempty(regexp(NomTypeInput,'[ab|AB|-]', 'once')) |
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| 112 | set(handles.ListCompareMode,'Value',2) %mode displacement advised if the nomencalture does not involve index pairs |
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| 113 | else |
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| 114 | set(handles.ListCompareMode,'Value',1) |
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| 115 | end |
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[1122] | 116 | [Data,tild,tild,errormsg]=nc2struct(SeriesData.FileInfo{1}.FileName,[]); |
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[774] | 117 | if ~isempty(errormsg) |
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| 118 | msgbox_uvmat('ERROR',['error in netcdf input file: ' errormsg]) |
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| 119 | return |
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| 120 | end |
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[910] | 121 | if isfield(Data,'.Civ1_ImageA') |
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[851] | 122 | [PathCiv1_ImageA,Civ1_ImageA,FileExtA]=fileparts(Data.Civ1_ImageA);%look for the source image A |
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| 123 | [PathCiv1_ImageB,Civ1_ImageB,FileExtA]=fileparts(Data.Civ1_ImageB);%look for the source image B |
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[910] | 124 | end |
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[774] | 125 | if isfield(Data,'Civ2_ImageA') |
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[642] | 126 | [PathCiv2_ImageA,Civ2_ImageA,FileExtA]=fileparts(Data.Civ2_ImageA); |
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| 127 | [PathCiv2_ImageB,Civ2_ImageB,FileExtA]=fileparts(Data.Civ2_ImageB); |
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[637] | 128 | end |
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| 129 | if size(Param.InputTable,1)==1 |
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[910] | 130 | if isfield(Data,'.Civ1_ImageA') |
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[661] | 131 | series('display_file_name',hhseries,Data.Civ1_ImageA,'append');%append the image series to the input list |
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[910] | 132 | [RootPath,SubDir,RootFile,i1,i2,j1,j2,FileExt,NomTypeImaA]=fileparts_uvmat(Data.Civ1_ImageA); |
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| 133 | [RootPath,SubDir,RootFile,i1,i2,j1,j2,FileExt,NomTypeImaB]=fileparts_uvmat(Data.Civ1_ImageB); |
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| 134 | else |
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| 135 | series('display_file_name',hhseries,Data.Civ2_ImageA,'append');%append the image series to the input list |
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| 136 | [RootPath,SubDir,RootFile,i1,i2,j1,j2,FileExt,NomTypeImaA]=fileparts_uvmat(Data.Civ2_ImageA); |
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| 137 | [RootPath,SubDir,RootFile,i1,i2,j1,j2,FileExt,NomTypeImaB]=fileparts_uvmat(Data.Civ2_ImageB); |
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| 138 | end |
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[637] | 139 | end |
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[910] | 140 | |
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[642] | 141 | iview_image=2;%line # for the input images |
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[599] | 142 | case 'civxdata'% case of civx data, |
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| 143 | msgbox_uvmat('ERROR','old civX convention, use the GUI civ') |
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| 144 | return |
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[761] | 145 | otherwise |
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[1033] | 146 | if ~strcmp(FieldType,'image') |
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[781] | 147 | msgbox_uvmat('ERROR','civ_series needs images, scalar fields in netcdf format, or civ data as input') |
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[761] | 148 | return |
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[1033] | 149 | end |
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[599] | 150 | end |
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[598] | 151 | |
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| 152 | %% prepare the GUI with input parameters |
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[833] | 153 | % |
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[599] | 154 | set(handles.ref_i,'String',num2str(Param.IndexRange.first_i)) |
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| 155 | if isfield(Param.IndexRange,'first_j') |
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[603] | 156 | set(handles.ref_j,'String',num2str(Param.IndexRange.first_j)) |
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[597] | 157 | end |
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[856] | 158 | set(handles.ConfigSource,'String','\default') |
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[599] | 159 | |
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[774] | 160 | %% set the menus of image pairs and default selection for civ_input %%%%%%%%%%%%%%%%%%% |
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| 161 | |
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| 162 | %% display the min and max indices for the whole file series |
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[855] | 163 | if isempty(Param.IndexRange.MaxIndex_i)|| isempty(Param.IndexRange.MinIndex_i) |
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| 164 | msgbox_uvmat('ERROR','REFRESH the input files in the GUI series') |
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| 165 | return |
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| 166 | end |
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[776] | 167 | MaxIndex_i=Param.IndexRange.MaxIndex_i(iview_image); |
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| 168 | MinIndex_i=Param.IndexRange.MinIndex_i(iview_image); |
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| 169 | MaxIndex_j=1;%default |
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| 170 | MinIndex_j=1; |
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| 171 | if isfield(Param.IndexRange,'MaxIndex_j')&&isfield(Param.IndexRange,'MinIndex_j')... |
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| 172 | && numel(Param.IndexRange.MaxIndex_j')>=iview_image &&numel(Param.IndexRange.MinIndex_j')>=iview_image |
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| 173 | MaxIndex_j=Param.IndexRange.MaxIndex_j(iview_image); |
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| 174 | MinIndex_j=Param.IndexRange.MinIndex_j(iview_image); |
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[597] | 175 | end |
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[776] | 176 | %update the bounds if possible |
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| 177 | if isfield(SeriesData,'i1_series')&&numel(SeriesData.i1_series)>=iview_image |
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| 178 | if size(SeriesData.i1_series{iview_image},2)==2 && min(min(SeriesData.i1_series{iview_image}(:,1,:)))==0 |
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| 179 | MinIndex_j=1;% index j set to 1 by default |
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| 180 | MaxIndex_j=1; |
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| 181 | MinIndex_i=find(SeriesData.i1_series{iview_image}(1,2,:), 1 )-1;% min ref index i detected in the series (corresponding to the first non-zero value of i1_series, except for zero index) |
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| 182 | MaxIndex_i=find(SeriesData.i1_series{iview_image}(1,2,:),1,'last' )-1;%max ref index i detected in the series (corresponding to the last non-zero value of i1_series) |
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| 183 | else |
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| 184 | ref_i=squeeze(max(SeriesData.i1_series{iview_image}(1,:,:),[],2));% select ref_j index for each ref_i |
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| 185 | ref_j=squeeze(max(SeriesData.j1_series{iview_image}(1,:,:),[],3));% select ref_i index for each ref_j |
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| 186 | MinIndex_i=min(find(ref_i))-1; |
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| 187 | MaxIndex_i=max(find(ref_i))-1; |
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| 188 | MaxIndex_j=max(find(ref_j))-1; |
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| 189 | MinIndex_j=min(find(ref_j))-1; |
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| 190 | end |
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| 191 | end |
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[599] | 192 | |
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[918] | 193 | |
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[599] | 194 | %% transfer the time from the GUI series, or use file index by default |
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| 195 | time=[]; |
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| 196 | TimeUnit='frame'; %default |
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| 197 | CoordUnit='';%default |
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| 198 | pxcm_search=1; |
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[951] | 199 | if isfield(SeriesData,'Time') &&numel(SeriesData.Time')>=1 && ~isempty(SeriesData.Time{1}) |
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[599] | 200 | time=SeriesData.Time{1}; |
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| 201 | end |
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[609] | 202 | if isfield(Param.IndexRange,'TimeUnit')&&~isempty(Param.IndexRange.TimeUnit) |
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| 203 | TimeUnit=Param.IndexRange.TimeUnit; |
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[1020] | 204 | end |
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[599] | 205 | if isfield(SeriesData,'GeometryCalib') |
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| 206 | tsai=SeriesData.GeometryCalib; |
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| 207 | if isfield(tsai,'fx_fy') |
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| 208 | pxcm_search=max(tsai.fx_fy(1),tsai.fx_fy(2));%pixels:cm estimated for the search range |
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| 209 | end |
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| 210 | if isfield(tsai,'CoordUnit') |
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| 211 | CoordUnit=tsai.CoordUnit; |
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| 212 | end |
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| 213 | end |
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| 214 | |
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| 215 | %% timing display |
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| 216 | %show the reference image edit box if relevant (not needed for movies or in the absence of time information |
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| 217 | if numel(time)>=2 % if there are at least two time values to define dt |
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| 218 | if size(time,1)<MaxIndex_i; |
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| 219 | msgbox_uvmat('WARNING','maximum i index restricted by the timing of the xml file'); |
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| 220 | elseif size(time,2)<MaxIndex_j |
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| 221 | msgbox_uvmat('WARNING','maximum j index restricted by the timing of the xml file'); |
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| 222 | end |
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| 223 | MaxIndex_i=min(size(time,1),MaxIndex_i);%possibly adjust the max index according to time data |
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| 224 | MaxIndex_j=min(size(time,2),MaxIndex_j); |
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[851] | 225 | set(handles.TimeSource,'String',Param.IndexRange.TimeSource); |
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[599] | 226 | else |
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[851] | 227 | set(handles.TimeSource,'String',''); %xml file not used for timing |
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[599] | 228 | TimeUnit='frame'; |
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| 229 | time=ones(MaxIndex_j-MinIndex_j+1,1)*(MinIndex_i:MaxIndex_i); |
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| 230 | time=time+0.001*(MinIndex_j:MaxIndex_j)'*ones(1,MaxIndex_i-MinIndex_i+1); |
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| 231 | end |
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| 232 | CivInputData.Time=time; |
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[637] | 233 | CivInputData.NomTypeIma=NomTypeImaA; |
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[599] | 234 | set(handles.civ_input,'UserData',CivInputData) |
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| 235 | set(handles.dt_unit,'String',['dt in m' TimeUnit]);%display dt in unit 10-3 of the time (e.g ms) |
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| 236 | set(handles.TimeUnit,'String',TimeUnit); |
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| 237 | set(handles.SearchRange,'UserData', pxcm_search); |
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| 238 | |
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[668] | 239 | |
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[774] | 240 | %% set the civ_input options, depending on the input file content if a nc file has been opened |
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| 241 | ListOptions={'CheckCiv1', 'CheckFix1' 'CheckPatch1', 'CheckCiv2', 'CheckFix2', 'CheckPatch2'}; |
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| 242 | checkbox=zeros(size(ListOptions));%default |
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[851] | 243 | checkrefresh=0; |
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[774] | 244 | if ind_opening==0 %case of image opening, start with Civ1 |
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| 245 | for index=1:numel(ListOptions) |
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| 246 | checkbox(index)=get(handles.(ListOptions{index}),'Value'); |
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| 247 | end |
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| 248 | index_max=find(checkbox, 1, 'last' ); |
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| 249 | if isempty(index_max),index_max=1;end |
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| 250 | for index=1:index_max |
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| 251 | set(handles.(ListOptions{index}),'Value',1)% select all operations starting from CIV1 |
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| 252 | end |
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[851] | 253 | else %case of netcdf file opening, start with the stage read in the file if the input file is being refreshed |
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[1147] | 254 | % if isequal(get(hhseries.REFRESH,'BackgroundColor'),[1 1 0]) &&... |
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| 255 | % ~(isfield(Param,'ActionInput') && isfield(Param.ActionInput,'ConfigSource')) |
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[851] | 256 | for index = 1:min(ind_opening,5) |
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| 257 | set(handles.(ListOptions{index}),'value',0) |
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| 258 | fill_civ_input(Data,handles); %fill civ_input with the parameters retrieved from an input Civ file |
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| 259 | end |
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[1147] | 260 | if isempty(FileInfo) |
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| 261 | FileInfo.FileName=''; |
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| 262 | end |
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[851] | 263 | set(handles.ConfigSource,'String',FileInfo.FileName); |
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| 264 | set(handles.(ListOptions{min(ind_opening+1,6)}),'value',1) |
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| 265 | for index = ind_opening+2:6 |
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| 266 | set(handles.(ListOptions{index}),'value',0) |
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| 267 | end |
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| 268 | checkrefresh=1; |
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[1147] | 269 | % end |
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[851] | 270 | if ind_opening>=3 |
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[855] | 271 | set(handles.CheckCiv3,'Visible','on')% make visible the switch 'iterate/repet' for Civ2. |
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[851] | 272 | else |
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[855] | 273 | set(handles.CheckCiv3,'Visible','off') |
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[774] | 274 | end |
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| 275 | end |
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| 276 | |
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[851] | 277 | %% introduce the stored Civ parameters if available (from previous input or ImportConfig in series) |
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| 278 | if ~checkrefresh && isfield(Param,'ActionInput')&& strcmp(Param.ActionInput.Program,Param.Action.ActionName)% the program fits with the stored data |
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| 279 | fill_GUI(Param.ActionInput,hObject);%fill the GUI with the parameters retrieved from the input Param |
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| 280 | hcheckgrid=findobj(handles.civ_input,'Tag','CheckGrid'); |
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| 281 | for ilist=1:numel(hcheckgrid) |
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| 282 | if get(hcheckgrid(ilist),'Value')% if a grid is used, do not show Dx and Dy for an automatic grid |
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| 283 | hparent=get(hcheckgrid(ilist),'parent');%handles of the parent panel |
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| 284 | hchildren=get(hparent,'children'); |
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| 285 | handle_dx=findobj(hchildren,'tag','num_Dx'); |
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| 286 | handle_dy=findobj(hchildren,'tag','num_Dy'); |
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| 287 | handle_title_dx=findobj(hchildren,'tag','title_Dx'); |
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| 288 | handle_title_dy=findobj(hchildren,'tag','title_Dy'); |
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| 289 | set(handle_dx,'Visible','off'); |
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| 290 | set(handle_dy,'Visible','off'); |
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| 291 | set(handle_title_dy,'Visible','off'); |
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| 292 | set(handle_title_dx,'Visible','off'); |
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| 293 | end |
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| 294 | end |
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[885] | 295 | if isfield(Param.ActionInput,'Civ2') |
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[1033] | 296 | CheckDeformation_Callback(hObject, eventdata, handles) |
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[885] | 297 | end |
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[851] | 298 | end |
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[1033] | 299 | if isfield(Param,'ActionInput') && isfield(Param.ActionInput,'ListCompareMode')&&... |
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| 300 | strcmp(Param.ActionInput.ListCompareMode,'displacement') |
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| 301 | set(handles.PairIndices,'Visible','off') |
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| 302 | set(handles.CheckRefFile,'Visible','on') |
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| 303 | else |
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| 304 | set(handles.CheckRefFile,'Visible','off') |
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| 305 | end |
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[1020] | 306 | |
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[1148] | 307 | %% reinitialise pair menus |
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| 308 | set(handles.ListPairMode,'Value',1) |
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| 309 | set(handles.ListPairMode,'String',{''}) |
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| 310 | set(handles.ListPairCiv1,'Value',1) |
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| 311 | set(handles.ListPairCiv1,'String',{''}) |
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| 312 | set(handles.ListPairCiv2,'Value',1) |
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| 313 | set(handles.ListPairCiv2,'String',{''}) |
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| 314 | |
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[918] | 315 | %% set the menu and default choice of civ pairs |
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[1148] | 316 | if isequal(MaxIndex_j,MinIndex_j)|| strcmp(Param.Action.ActionName,'civ_3D')% no possibility of j pairs |
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[1016] | 317 | PairMenu={'series(Di)'}; |
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[1141] | 318 | elseif MaxIndex_j-MinIndex_j==1 |
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| 319 | PairMenu={'pair j1-j2'}; |
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| 320 | elseif MaxIndex_i==MinIndex_i && MaxIndex_j-MinIndex_j>2% simple series in j |
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[1016] | 321 | PairMenu={'pair j1-j2';'series(Dj)'}; |
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[918] | 322 | else |
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[1016] | 323 | PairMenu={'pair j1-j2';'series(Dj)';'series(Di)'};%multiple choice |
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[918] | 324 | end |
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[1016] | 325 | set(handles.ListPairMode,'String',PairMenu) |
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[918] | 326 | |
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[1016] | 327 | %% set default choice of pair mode |
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[1097] | 328 | PairIndex=[]; |
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[1016] | 329 | if isfield(Param,'ActionInput') && isfield(Param.ActionInput,'PairIndices') |
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[1097] | 330 | PairIndex=find(strcmp(Param.ActionInput.PairIndices.ListPairMode,PairMenu));%retrieve the previous option |
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[1016] | 331 | end |
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[1148] | 332 | if strcmp(Param.Action.ActionName,'civ_3D') |
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| 333 | PairIndex=1 |
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| 334 | else |
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| 335 | if isempty(PairIndex) |
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| 336 | if ~isfield(Param.IndexRange,'first_j')||isequal(MaxIndex_j,MinIndex_j)% no possibility of j pairs |
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| 337 | PairIndex=1; |
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| 338 | elseif MaxIndex_i==1 && MaxIndex_j>1% simple series in j |
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| 339 | if MaxIndex_j <= 10 |
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| 340 | PairIndex=1;% advice 'pair j1-j2' except in MaxIndex_j is large |
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| 341 | end |
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[1097] | 342 | else |
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[1148] | 343 | if strcmp(NomTypeNc,'_1-2_1') |
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| 344 | PairIndex=3;% advise 'series(Di)' |
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| 345 | elseif MaxIndex_j <= 10 |
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| 346 | PairIndex=1;% advice 'pair j1-j2' except in MaxIndex_j is large |
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| 347 | else |
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| 348 | PairIndex=2;% advice 'Dj' |
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| 349 | end |
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[1016] | 350 | end |
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| 351 | end |
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| 352 | end |
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[1148] | 353 | set(handles.ListPairMode,'Value',PairIndex); |
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[1016] | 354 | |
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[918] | 355 | %% indicate the min and max indices i and j on the GUI |
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| 356 | set(handles.MinIndex_i,'String',num2str(MinIndex_i)) |
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| 357 | set(handles.MaxIndex_i,'String',num2str(MaxIndex_i)) |
---|
| 358 | set(handles.MinIndex_j,'String',num2str(MinIndex_j)) |
---|
| 359 | set(handles.MaxIndex_j,'String',num2str(MaxIndex_j)) |
---|
| 360 | |
---|
[774] | 361 | %% set the reference indices from the input file indices |
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[852] | 362 | if ~(isfield(Param,'ActionInput') && isfield(Param.ActionInput,'ConfigSource')) |
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[774] | 363 | update_CivOptions(handles,ind_opening)% fill the menu of possible pairs |
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[851] | 364 | end |
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[774] | 365 | |
---|
| 366 | %% list the possible index pairs, depending on the option set in ListPairMode |
---|
| 367 | ListPairMode_Callback([], [], handles) |
---|
| 368 | |
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[599] | 369 | %% set the GUI to modal: wait for OK to close |
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[598] | 370 | set(handles.civ_input,'WindowStyle','modal')% Make the GUI modal |
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[597] | 371 | drawnow |
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[856] | 372 | uiwait(handles.civ_input);% wait for OK action to end the function |
---|
[597] | 373 | |
---|
[599] | 374 | |
---|
[597] | 375 | %------------------------------------------------------------------------ |
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| 376 | % --- Outputs from this function are returned to the command line. |
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| 377 | function varargout = civ_input_OutputFcn(hObject, eventdata, handles) |
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| 378 | %------------------------------------------------------------------------ |
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| 379 | % Get default command line output from handles structure |
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[668] | 380 | varargout{1}=[];% default output when civ_input is canceled (no 'OK') |
---|
| 381 | if ~isempty(handles) |
---|
| 382 | varargout{1} = handles.output; |
---|
| 383 | delete(handles.civ_input) |
---|
| 384 | end |
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[597] | 385 | |
---|
| 386 | % --- Executes when user attempts to close get_field. |
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[598] | 387 | function civ_input_CloseRequestFcn(hObject, eventdata, handles) |
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[597] | 388 | if isequal(get(handles.get_field, 'waitstatus'), 'waiting') |
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| 389 | % The GUI is still in UIWAIT, us UIRESUME |
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[598] | 390 | uiresume(handles.civ_input); |
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[597] | 391 | else |
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| 392 | % The GUI is no longer waiting, just close it |
---|
[598] | 393 | delete(handles.civ_input); |
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[597] | 394 | end |
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| 395 | |
---|
[851] | 396 | %------------------------------------------------------------------------ |
---|
| 397 | % --- Executes on button press in SetDefaultParam. |
---|
| 398 | %------------------------------------------------------------------------ |
---|
| 399 | function SetDefaultParam_Callback(hObject, eventdata, handles) |
---|
| 400 | |
---|
[856] | 401 | Param.ConfigSource='\default'; |
---|
| 402 | |
---|
| 403 | %% Civ1 parameters |
---|
[874] | 404 | %Param.CheckCiv1=1; |
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[1148] | 405 | Param.Civ1.CorrBoxSize=[25 25 1]; |
---|
| 406 | Param.Civ1.SearchBoxSize=[55 55 5]; |
---|
[856] | 407 | Param.Civ1.SearchBoxShift=[0 0]; |
---|
| 408 | Param.Civ1.CorrSmooth=1; |
---|
| 409 | Param.Civ1.Dx=20; |
---|
| 410 | Param.Civ1.Dy=20; |
---|
| 411 | Param.Civ1.CheckGrid=0; |
---|
| 412 | Param.Civ1.CheckMask=0; |
---|
[873] | 413 | Param.Civ1.Mask=''; |
---|
[856] | 414 | Param.Civ1.CheckThreshold=0; |
---|
| 415 | Param.Civ1.TestCiv1=0; |
---|
| 416 | |
---|
| 417 | %% Fix1 parameters |
---|
| 418 | Param.Fix1.MinCorr=0.2000; |
---|
| 419 | |
---|
| 420 | %% Patch1 parameters |
---|
[874] | 421 | %Param.CheckPatch1=1; |
---|
[1148] | 422 | Param.Patch1.FieldSmooth=20; |
---|
| 423 | Param.Patch1.MaxDiff=2; |
---|
| 424 | Param.Patch1.SubDomainSize=125; |
---|
[856] | 425 | |
---|
| 426 | %% Civ2 parameters |
---|
[874] | 427 | %Param.CheckCiv2=1; |
---|
[856] | 428 | Param.Civ2.CorrBoxSize=[21 21]; |
---|
[862] | 429 | Param.Civ2.SearchBoxSize=[27 27]; |
---|
[856] | 430 | Param.Civ2.CorrSmooth=1; |
---|
| 431 | Param.Civ2.Dx=10; |
---|
| 432 | Param.Civ2.Dy=10; |
---|
| 433 | Param.Civ2.CheckGrid=0; |
---|
| 434 | Param.Civ2.CheckMask=0; |
---|
[873] | 435 | Param.Civ2.Mask=''; |
---|
[856] | 436 | Param.Civ2.CheckThreshold=0; |
---|
| 437 | |
---|
| 438 | %% Fix2 parameters |
---|
| 439 | Param.Fix2.MinCorr=0.2000; |
---|
| 440 | |
---|
| 441 | %% Patch2 parameters |
---|
[1148] | 442 | Param.Patch2.FieldSmooth=5; |
---|
[856] | 443 | Param.Patch2.MaxDiff=1.5000; |
---|
[1148] | 444 | Param.Patch2.SubDomainSize=250; |
---|
[856] | 445 | Param.Patch2.TestPatch2=0; |
---|
| 446 | |
---|
| 447 | fill_GUI(Param,handles.civ_input)% fill the elements of the GUI series with the input parameters |
---|
[873] | 448 | update_CivOptions(handles,0) |
---|
[856] | 449 | |
---|
[597] | 450 | % ----------------------------------------------------------------------- |
---|
| 451 | % ----------------------------------------------------------------------- |
---|
| 452 | % --- Open the help html file |
---|
| 453 | function MenuHelp_Callback(hObject, eventdata, handles) |
---|
| 454 | % ----------------------------------------------------------------------- |
---|
[774] | 455 | web('http://servforge.legi.grenoble-inp.fr/projects/soft-uvmat/wiki/UvmatHelp#Civ') |
---|
[597] | 456 | |
---|
| 457 | %------------------------------------------------------------------------ |
---|
| 458 | % --- Executes on carriage return on the subdir checkciv1 edit window |
---|
[604] | 459 | function Civ1_ImageB_Callback(hObject, eventdata, handles) |
---|
[597] | 460 | %------------------------------------------------------------------------ |
---|
[604] | 461 | SubDir=get(handles.Civ1_ImageB,'String'); |
---|
[597] | 462 | menu_str=get(handles.ListSubdirCiv1,'String');% read the list of subdirectories for update |
---|
| 463 | ichoice=find(strcmp(SubDir,menu_str),1); |
---|
| 464 | if isempty(ichoice) |
---|
| 465 | ilist=numel(menu_str); %select 'new...' in the menu |
---|
| 466 | else |
---|
| 467 | ilist=ichoice; |
---|
| 468 | end |
---|
| 469 | set(handles.ListSubdirCiv1,'Value',ilist)% select the selected subdir in the menu |
---|
| 470 | if get(handles.CheckCiv1,'Value')% if Civ1 is performed |
---|
[604] | 471 | set(handles.Civ2_ImageA,'String',SubDir);% set by default civ2 directory the same as civ1 |
---|
[597] | 472 | % set(handles.ListSubdirCiv2,'Value',ilist) |
---|
| 473 | else % if Civ1 data already exist |
---|
[774] | 474 | errormsg=find_netcpair_civ(handles,1); %update the list of available index pairs in the new directory |
---|
[597] | 475 | if ~isempty(errormsg) |
---|
| 476 | msgbox_uvmat('ERROR',errormsg) |
---|
| 477 | end |
---|
| 478 | end |
---|
| 479 | |
---|
| 480 | %------------------------------------------------------------------------ |
---|
| 481 | % --- Executes on carriage return on the SubDir checkciv1 edit window |
---|
[604] | 482 | function Civ2_ImageA_Callback(hObject, eventdata, handles) |
---|
[597] | 483 | %------------------------------------------------------------------------ |
---|
[604] | 484 | SubDir=get(handles.Civ1_ImageB,'String'); |
---|
[597] | 485 | menu_str=get(handles.ListSubdirCiv2,'String');% read the list of subdirectories for update |
---|
| 486 | ichoice=find(strcmp(SubDir,menu_str),1); |
---|
| 487 | if isempty(ichoice) |
---|
| 488 | ilist=numel(menu_str); %select 'new...' in the menu |
---|
| 489 | else |
---|
| 490 | ilist=ichoice; |
---|
| 491 | end |
---|
| 492 | set(handles.ListSubdirCiv2,'Value',ilist)% select the selected subdir in the menu |
---|
| 493 | %update the list of available pairs from netcdf files in the new directory |
---|
| 494 | if ~get(handles.CheckCiv2,'Value') && ~get(handles.CheckCiv1,'Value') && ~get(handles.CheckFix1,'Value') && ~get(handles.CheckPatch1,'Value') |
---|
| 495 | errormsg=find_netcpair_civ(handles,2); |
---|
| 496 | if ~isempty(errormsg) |
---|
| 497 | msgbox_uvmat('ERROR',errormsg) |
---|
| 498 | end |
---|
| 499 | end |
---|
| 500 | |
---|
| 501 | %------------------------------------------------------------------------ |
---|
| 502 | % --- Executes on button press in CheckCiv1. |
---|
| 503 | function CheckCiv1_Callback(hObject, eventdata, handles) |
---|
| 504 | %------------------------------------------------------------------------ |
---|
| 505 | update_CivOptions(handles,0) |
---|
| 506 | |
---|
| 507 | %------------------------------------------------------------------------ |
---|
| 508 | % --- Executes on button press in CheckFix1. |
---|
| 509 | function CheckFix1_Callback(hObject, eventdata, handles) |
---|
| 510 | %------------------------------------------------------------------------ |
---|
| 511 | update_CivOptions(handles,0) |
---|
| 512 | |
---|
| 513 | %------------------------------------------------------------------------ |
---|
| 514 | % --- Executes on button press in CheckPatch1. |
---|
| 515 | function CheckPatch1_Callback(hObject, eventdata, handles) |
---|
| 516 | %------------------------------------------------------------------------ |
---|
| 517 | update_CivOptions(handles,0) |
---|
| 518 | |
---|
| 519 | %------------------------------------------------------------------------ |
---|
| 520 | % --- Executes on button press in CheckCiv2. |
---|
| 521 | function CheckCiv2_Callback(hObject, eventdata, handles) |
---|
| 522 | %------------------------------------------------------------------------ |
---|
| 523 | update_CivOptions(handles,0) |
---|
| 524 | |
---|
| 525 | %------------------------------------------------------------------------ |
---|
| 526 | % --- Executes on button press in CheckFix2. |
---|
| 527 | function CheckFix2_Callback(hObject, eventdata, handles) |
---|
| 528 | %------------------------------------------------------------------------ |
---|
| 529 | update_CivOptions(handles,0) |
---|
| 530 | |
---|
| 531 | %------------------------------------------------------------------------ |
---|
| 532 | % --- Executes on button press in CheckPatch2. |
---|
| 533 | function CheckPatch2_Callback(hObject, eventdata, handles) |
---|
| 534 | %------------------------------------------------------------------------ |
---|
| 535 | update_CivOptions(handles,0) |
---|
| 536 | |
---|
| 537 | %------------------------------------------------------------------------ |
---|
| 538 | % --- activated by any checkbox controling the selection of Civ1,Fix1,Patch1,Civ2,Fix2,Patch2 |
---|
| 539 | function update_CivOptions(handles,opening) |
---|
| 540 | %------------------------------------------------------------------------ |
---|
[851] | 541 | if opening>0 |
---|
| 542 | set(handles.CheckCiv2,'UserData',opening)% store the info on the current status of the civ processing |
---|
| 543 | end |
---|
[597] | 544 | checkbox=zeros(1,6); |
---|
| 545 | checkbox(1)=get(handles.CheckCiv1,'Value'); |
---|
| 546 | checkbox(2)=get(handles.CheckFix1,'Value'); |
---|
| 547 | checkbox(3)=get(handles.CheckPatch1,'Value'); |
---|
| 548 | checkbox(4)=get(handles.CheckCiv2,'Value'); |
---|
| 549 | checkbox(5)=get(handles.CheckFix2,'Value'); |
---|
| 550 | checkbox(6)=get(handles.CheckPatch2,'Value'); |
---|
| 551 | if opening==0 |
---|
| 552 | errormsg=find_netcpair_civ(handles,1); % select the available netcdf files |
---|
| 553 | if ~isempty(errormsg) |
---|
| 554 | msgbox_uvmat('ERROR',errormsg) |
---|
| 555 | end |
---|
| 556 | end |
---|
[851] | 557 | if max(checkbox(4:6))>0% case of civ2 pair choice needed |
---|
[597] | 558 | set(handles.TitlePairCiv2,'Visible','on') |
---|
| 559 | set(handles.ListPairCiv2,'Visible','on') |
---|
| 560 | if ~opening |
---|
| 561 | errormsg=find_netcpair_civ(handles,2); % select the available netcdf files |
---|
| 562 | if ~isempty(errormsg) |
---|
| 563 | msgbox_uvmat('ERROR',errormsg) |
---|
| 564 | end |
---|
| 565 | end |
---|
| 566 | else |
---|
| 567 | set(handles.ListPairCiv2,'Visible','off') |
---|
| 568 | end |
---|
[862] | 569 | hseries=findobj(allchild(0),'Tag','series');% find the parent GUI 'series' |
---|
| 570 | hhseries=guidata(hseries); %handles of the elements in 'series' |
---|
| 571 | InputTable=get(hhseries.InputTable,'Data'); |
---|
| 572 | if size(InputTable,1)>=1 && strcmp(InputTable{1,5},'.nc') && max(checkbox(1:3))==0 %&& get(handles.CheckCiv2,'UserData')==6,% no operation asked before Civ2 and input file ready for civ3 |
---|
[855] | 573 | set(handles.CheckCiv3,'Visible','on') |
---|
[851] | 574 | else |
---|
[855] | 575 | set(handles.CheckCiv3,'Visible','off') |
---|
[851] | 576 | end |
---|
| 577 | |
---|
| 578 | %% set the visibility of the different panels |
---|
[597] | 579 | options={'Civ1','Fix1','Patch1','Civ2','Fix2','Patch2'}; |
---|
| 580 | for ilist=1:length(options) |
---|
| 581 | if checkbox(ilist) |
---|
| 582 | set(handles.(options{ilist}),'Visible','on') |
---|
| 583 | else |
---|
| 584 | set(handles.(options{ilist}),'Visible','off') |
---|
| 585 | end |
---|
| 586 | end |
---|
| 587 | |
---|
| 588 | %------------------------------------------------------------------------ |
---|
| 589 | % --- Executes on button press in OK: processing on local computer |
---|
| 590 | function OK_Callback(hObject, eventdata, handles) |
---|
| 591 | %------------------------------------------------------------------------ |
---|
| 592 | |
---|
[855] | 593 | ActionInput=read_GUI(handles.civ_input);% read the infos on the GUI civ_input |
---|
[851] | 594 | |
---|
[855] | 595 | %% correct input inconsistencies |
---|
[851] | 596 | if isfield(ActionInput,'Civ1') |
---|
| 597 | checkeven=(mod(ActionInput.Civ1.CorrBoxSize,2)==0); |
---|
| 598 | ActionInput.Civ1.CorrBoxSize(checkeven)=ActionInput.Civ1.CorrBoxSize(checkeven)+1;% set correlation box sizes to odd values |
---|
[1148] | 599 | ActionInput.Civ1.SearchBoxSize(1:2)=max(ActionInput.Civ1.SearchBoxSize(1:2),ActionInput.Civ1.CorrBoxSize(1:2)+8);% insure that the search box size is large enough |
---|
[851] | 600 | checkeven=(mod(ActionInput.Civ1.SearchBoxSize,2)==0); |
---|
| 601 | ActionInput.Civ1.SearchBoxSize(checkeven)=ActionInput.Civ1.SearchBoxSize(checkeven)+1;% set search box sizes to odd values |
---|
| 602 | end |
---|
| 603 | if isfield(ActionInput,'Civ2') |
---|
| 604 | checkeven=(mod(ActionInput.Civ2.CorrBoxSize,2)==0); |
---|
| 605 | ActionInput.Civ2.CorrBoxSize(checkeven)=ActionInput.Civ2.CorrBoxSize(checkeven)+1;% set correlation box sizes to odd values |
---|
[862] | 606 | ActionInput.Civ2.SearchBoxSize=max(ActionInput.Civ2.SearchBoxSize,ActionInput.Civ2.CorrBoxSize+4); |
---|
[851] | 607 | checkeven=(mod(ActionInput.Civ2.SearchBoxSize,2)==0); |
---|
| 608 | ActionInput.Civ2.SearchBoxSize(checkeven)=ActionInput.Civ2.SearchBoxSize(checkeven)+1;% set search box sizes to odd values |
---|
| 609 | end |
---|
| 610 | |
---|
[855] | 611 | %% correct mask or grid name for Windows system (replace '\' by '/') |
---|
| 612 | if isfield(ActionInput,'Civ1') |
---|
| 613 | if isfield(ActionInput.Civ1,'Mask') |
---|
| 614 | ActionInput.Civ1.Mask=regexprep(ActionInput.Civ1.Mask,'\','/'); |
---|
[822] | 615 | end |
---|
[855] | 616 | if isfield(ActionInput.Civ1,'Grid') |
---|
| 617 | ActionInput.Civ1.Grid=regexprep(ActionInput.Civ1.Grid,'\','/'); |
---|
[822] | 618 | end |
---|
| 619 | end |
---|
[855] | 620 | if isfield(ActionInput,'Civ2') |
---|
| 621 | if isfield(ActionInput.Civ2,'Mask') |
---|
| 622 | ActionInput.Civ2.Mask=regexprep(ActionInput.Civ2.Mask,'\','/'); |
---|
[822] | 623 | end |
---|
[855] | 624 | if isfield(ActionInput.Civ2,'Grid') |
---|
| 625 | ActionInput.Civ2.Grid=regexprep(ActionInput.Civ2.Grid,'\','/'); |
---|
[822] | 626 | end |
---|
| 627 | end |
---|
[855] | 628 | |
---|
| 629 | %% exit the GUI and close it |
---|
| 630 | handles.output.ActionInput=ActionInput; |
---|
[597] | 631 | guidata(hObject, handles);% Update handles structure |
---|
[598] | 632 | uiresume(handles.civ_input); |
---|
[597] | 633 | |
---|
| 634 | |
---|
| 635 | %------------------------------------------------------------------------ |
---|
| 636 | % --- Executes on button press in ListCompareMode. |
---|
| 637 | function ListCompareMode_Callback(hObject, eventdata, handles) |
---|
| 638 | %------------------------------------------------------------------------ |
---|
| 639 | ListCompareMode=get(handles.ListCompareMode,'String'); |
---|
| 640 | option=ListCompareMode{get(handles.ListCompareMode,'Value')}; |
---|
[645] | 641 | hseries=findobj(allchild(0),'Tag','series'); |
---|
| 642 | SeriesData=get(hseries,'UserData'); |
---|
| 643 | check_nc=strcmp(SeriesData.FileType{1},'.nc'); |
---|
| 644 | ImageType=SeriesData.FileType(2:end); |
---|
| 645 | if check_nc |
---|
| 646 | ImageType=SeriesData.FileType(2:end); |
---|
| 647 | else |
---|
| 648 | ImageType=SeriesData.FileType; |
---|
| 649 | end |
---|
| 650 | hhseries=guidata(hseries); |
---|
| 651 | InputTable=get(hhseries.InputTable,'Data'); |
---|
| 652 | OriginIndex='off'; |
---|
| 653 | PairIndices='off'; |
---|
[597] | 654 | switch option |
---|
| 655 | case 'PIV' |
---|
[1020] | 656 | PairIndices='on';% needs to define index pairs for PIV |
---|
[1148] | 657 | % case 'PIV volume' |
---|
| 658 | % PairIndices='on';% needs to define index pairs for PIV |
---|
| 659 | % set(handles.ListPairMode,'Value',1) |
---|
| 660 | % set(handles.ListPairMode,'String',{'series(Di)'}) |
---|
| 661 | % ListPairMode_Callback(hObject, eventdata, handles) |
---|
[645] | 662 | case 'displacement' |
---|
| 663 | OriginIndex='on';%define a frame origin for displacement |
---|
[597] | 664 | end |
---|
[645] | 665 | set(handles.num_OriginIndex,'Visible',OriginIndex) |
---|
| 666 | set(handles.OriginIndex_title,'Visible',OriginIndex) |
---|
[1020] | 667 | set(handles.CheckRefFile,'Visible',OriginIndex) |
---|
| 668 | set(handles.RefFile,'Visible',OriginIndex) |
---|
[645] | 669 | set(handles.PairIndices,'Visible',PairIndices) |
---|
[1020] | 670 | ListPairMode_Callback(hObject,eventdata,handles) |
---|
| 671 | if strcmp(OriginIndex,'on') |
---|
| 672 | set(handles.CheckRefFile,'Value',1) |
---|
| 673 | CheckRefFile_Callback(hObject,eventdata,handles) |
---|
| 674 | end |
---|
[645] | 675 | |
---|
[597] | 676 | |
---|
| 677 | |
---|
| 678 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 679 | % Callbacks in the uipanel Pair Indices |
---|
| 680 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 681 | %------------------------------------------------------------------------ |
---|
| 682 | % --- Executes on button press in ListPairMode. |
---|
| 683 | function ListPairMode_Callback(hObject, eventdata, handles) |
---|
| 684 | %------------------------------------------------------------------------ |
---|
| 685 | compare_list=get(handles.ListCompareMode,'String'); |
---|
| 686 | val=get(handles.ListCompareMode,'Value'); |
---|
| 687 | compare=compare_list{val}; |
---|
| 688 | if strcmp(compare,'displacement')||strcmp(compare,'shift') |
---|
[1020] | 689 | mode_selected='displacement'; |
---|
[597] | 690 | else |
---|
| 691 | mode_list=get(handles.ListPairMode,'String'); |
---|
| 692 | if ischar(mode_list) |
---|
| 693 | mode_list={mode_list}; |
---|
[1018] | 694 | end |
---|
| 695 | mode_value=get(handles.ListPairMode,'Value'); |
---|
| 696 | if isempty(mode_value) |
---|
| 697 | mode_value=1; |
---|
[597] | 698 | end |
---|
[1020] | 699 | mode_selected=mode_list{mode_value}; |
---|
[597] | 700 | end |
---|
| 701 | ref_i=str2double(get(handles.ref_i,'String')); |
---|
[599] | 702 | CivInputData=get(handles.civ_input,'UserData'); |
---|
[597] | 703 | TimeUnit=get(handles.TimeUnit,'String'); |
---|
| 704 | checkframe=strcmp(TimeUnit,'frame'); |
---|
[599] | 705 | time=CivInputData.Time; |
---|
| 706 | siztime=size(CivInputData.Time); |
---|
[609] | 707 | nbfield=siztime(1)-1; |
---|
| 708 | nbfield2=siztime(2)-1; |
---|
[883] | 709 | %indchosen=1; %%first pair selected by default |
---|
[597] | 710 | % in mode 'pair j1-j2', j1 and j2 are the file indices, else the indices |
---|
| 711 | % are relative to the reference indices ref_i and ref_j respectively. |
---|
[1020] | 712 | if isequal(mode_selected,'pair j1-j2') |
---|
[597] | 713 | dt=1; |
---|
| 714 | index=0; |
---|
| 715 | numlist_a=[]; |
---|
| 716 | numlist_B=[]; |
---|
| 717 | %get all the time intervals in bursts |
---|
| 718 | displ_dt=1;%default |
---|
| 719 | nbfield2=min(nbfield2,10);%limitate the number of pairs to 10x10 |
---|
| 720 | for numod_a=1:nbfield2-1 %nbfield2 always >=2 for 'pair j1-j2' mode |
---|
| 721 | for numod_b=(numod_a+1):nbfield2 |
---|
| 722 | index=index+1; |
---|
| 723 | numlist_a(index)=numod_a; |
---|
| 724 | numlist_b(index)=numod_b; |
---|
[932] | 725 | if size(time,2)>1 && ~checkframe && size(CivInputData.Time,1)>ref_i && size(CivInputData.Time,2)>numod_b |
---|
[599] | 726 | dt(numod_a,numod_b)=CivInputData.Time(ref_i+1,numod_b+1)-CivInputData.Time(ref_i+1,numod_a+1);%first time interval dt |
---|
[597] | 727 | displ_dt(index)=dt(numod_a,numod_b); |
---|
| 728 | else |
---|
| 729 | displ_dt(index)=1; |
---|
| 730 | end |
---|
| 731 | end |
---|
| 732 | end |
---|
| 733 | [dtsort,indsort]=sort(displ_dt); |
---|
| 734 | enable_j(handles, 'off') |
---|
[1020] | 735 | elseif isequal(mode_selected,'series(Dj)') %| isequal(mode,'st_series(Dj)') |
---|
[597] | 736 | enable_j(handles, 'on') |
---|
[1020] | 737 | elseif isequal(mode_selected,'series(Di)') %| isequal(mode,'st_series(Di)') |
---|
[597] | 738 | enable_i(handles, 'on') |
---|
| 739 | if nbfield2 > 1 |
---|
| 740 | enable_j(handles, 'on') |
---|
| 741 | else |
---|
| 742 | enable_j(handles, 'off') |
---|
| 743 | end |
---|
[1020] | 744 | elseif isequal(mode_selected,'displacement')%the pairs have the same indices |
---|
[597] | 745 | if nbfield > 1 || nbfield==0 |
---|
| 746 | enable_i(handles, 'on') |
---|
| 747 | else |
---|
| 748 | enable_j(handles, 'off') |
---|
| 749 | end |
---|
| 750 | if nbfield2 > 1 |
---|
| 751 | enable_j(handles, 'on') |
---|
| 752 | else |
---|
| 753 | enable_j(handles, 'off') |
---|
| 754 | end |
---|
| 755 | end |
---|
| 756 | errormsg=find_netcpair_civ( handles,1); |
---|
[1033] | 757 | if ~isempty(errormsg) |
---|
[597] | 758 | msgbox_uvmat('ERROR',errormsg) |
---|
[1033] | 759 | end |
---|
[597] | 760 | |
---|
[1033] | 761 | %------------------------------------------------------------------------ |
---|
[597] | 762 | function enable_i(handles, state) |
---|
| 763 | set(handles.itext,'Visible',state) |
---|
[645] | 764 | set(handles.MaxIndex_i,'Visible',state) |
---|
[597] | 765 | set(handles.ref_i,'Visible',state) |
---|
| 766 | |
---|
[1033] | 767 | %------------------------------------------------------------------------ |
---|
[597] | 768 | function enable_j(handles, state) |
---|
| 769 | set(handles.jtext,'Visible',state) |
---|
[645] | 770 | set(handles.MinIndex_j,'Visible',state) |
---|
| 771 | set(handles.MaxIndex_j,'Visible',state) |
---|
[597] | 772 | set(handles.ref_j,'Visible',state) |
---|
| 773 | |
---|
| 774 | %------------------------------------------------------------------------ |
---|
| 775 | % --- Executes on selection change in ListPairCiv1. |
---|
| 776 | function ListPairCiv1_Callback(hObject, eventdata, handles) |
---|
| 777 | %------------------------------------------------------------------------ |
---|
| 778 | %reproduce by default the chosen pair in the checkciv2 menu |
---|
| 779 | list_pair=get(handles.ListPairCiv1,'String');%get the menu of image pairs |
---|
[645] | 780 | PairString=list_pair{get(handles.ListPairCiv1,'Value')}; |
---|
[597] | 781 | |
---|
[645] | 782 | [ind1,ind2]=... |
---|
| 783 | find_pair_indices(PairString); |
---|
| 784 | hseries=findobj(allchild(0),'Tag','series'); |
---|
| 785 | hhseries=guidata(hseries); |
---|
| 786 | set(hhseries.num_first_j,'String',num2str(ind1)); |
---|
| 787 | set(hhseries.num_last_j,'String',num2str(ind2)); |
---|
| 788 | set(hhseries.num_incr_j,'String',num2str(ind2-ind1)); |
---|
[668] | 789 | set(handles.ListPairCiv2,'Value',get(handles.ListPairCiv1,'Value'))%civ2 selection the same as civ& by default |
---|
[645] | 790 | |
---|
| 791 | |
---|
[597] | 792 | %------------------------------------------------------------------------ |
---|
| 793 | % --- Executes on selection change in ListPairCiv2. |
---|
| 794 | function ListPairCiv2_Callback(hObject, eventdata, handles) |
---|
| 795 | %------------------------------------------------------------------------ |
---|
| 796 | |
---|
[851] | 797 | |
---|
[597] | 798 | %------------------------------------------------------------------------ |
---|
| 799 | function ref_i_Callback(hObject, eventdata, handles) |
---|
| 800 | %------------------------------------------------------------------------ |
---|
| 801 | mode_list=get(handles.ListPairMode,'String'); |
---|
| 802 | mode_value=get(handles.ListPairMode,'Value'); |
---|
[1020] | 803 | mode_selected=mode_list{mode_value}; |
---|
[597] | 804 | errormsg=find_netcpair_civ(handles,1);% update the menu of pairs depending on the available netcdf files |
---|
[1020] | 805 | if isequal(mode_selected,'series(Di)') || ...% we do patch2 only |
---|
[597] | 806 | (get(handles.CheckCiv2,'Value')==0 && get(handles.CheckCiv1,'Value')==0 && get(handles.CheckFix1,'Value')==0 && get(handles.CheckPatch1,'Value')==0) |
---|
| 807 | errormsg=find_netcpair_civ( handles,2); |
---|
| 808 | end |
---|
[851] | 809 | if isempty(errormsg) |
---|
| 810 | set(handles.ref_i,'BackgroundColor',[1 1 1]) |
---|
[856] | 811 | set(handles.ref_j,'BackgroundColor',[1 1 1]) |
---|
[851] | 812 | else |
---|
[597] | 813 | msgbox_uvmat('ERROR',errormsg) |
---|
| 814 | end |
---|
| 815 | |
---|
[851] | 816 | function ref_i_KeyPressFcn(hObject, eventdata, handles) |
---|
| 817 | set(hObject,'BackgroundColor',[1 0 1]) |
---|
| 818 | |
---|
| 819 | % %------------------------------------------------------------------------ |
---|
[1020] | 820 | |
---|
[597] | 821 | function errormsg=find_netcpair_civ(handles,index) |
---|
| 822 | %------------------------------------------------------------------------ |
---|
| 823 | set(gcf,'Pointer','watch')% set the mouse pointer to 'watch' (clock) |
---|
| 824 | |
---|
| 825 | %% initialisation |
---|
| 826 | errormsg=''; |
---|
[603] | 827 | CivInputData=get(handles.civ_input,'UserData'); |
---|
[597] | 828 | compare_list=get(handles.ListCompareMode,'String'); |
---|
| 829 | val=get(handles.ListCompareMode,'Value'); |
---|
| 830 | compare=compare_list{val}; |
---|
[1020] | 831 | mode_selected='displacement'; |
---|
[880] | 832 | if ~strcmp(compare,'displacement')%||strcmp(compare,'shift') |
---|
| 833 | |
---|
[597] | 834 | mode_list=get(handles.ListPairMode,'String'); |
---|
| 835 | mode_value=get(handles.ListPairMode,'Value'); |
---|
[1018] | 836 | if isempty(mode_value) |
---|
| 837 | mode_value=1; |
---|
| 838 | end |
---|
[597] | 839 | if isempty(mode_list) |
---|
| 840 | return |
---|
| 841 | end |
---|
[1020] | 842 | mode_selected=mode_list{mode_value}; |
---|
[597] | 843 | end |
---|
[603] | 844 | nom_type_ima=CivInputData.NomTypeIma; |
---|
[881] | 845 | menu_pair=get(handles.ListPairCiv1,'String');%previous menu of ListPairCiv1 |
---|
| 846 | PairCiv1Init=menu_pair{get(handles.ListPairCiv1,'Value')};%previous choice of pair |
---|
| 847 | menu_pair=get(handles.ListPairCiv2,'String');%previous menu of ListPairCiv1 |
---|
| 848 | PairCiv2Init=menu_pair{get(handles.ListPairCiv2,'Value')};%previous choice of pair |
---|
[597] | 849 | |
---|
| 850 | %% reads .nc subdirectoy and image numbers from the interface |
---|
[637] | 851 | %SubDirImages=get(handles.Civ1_ImageA,'String'); |
---|
[609] | 852 | %TODO: determine |
---|
[637] | 853 | %subdir_civ1=[SubDirImages get(handles.Civ1_ImageB,'String')];%subdirectory subdir_civ1 for the netcdf data |
---|
| 854 | %subdir_civ2=[SubDirImages get(handles.Civ2_ImageA,'String')];%subdirectory subdir_civ2 for the netcdf data |
---|
[597] | 855 | ref_i=str2double(get(handles.ref_i,'String')); |
---|
| 856 | ref_j=[]; |
---|
[1020] | 857 | if isequal(mode_selected,'pair j1-j2')%|isequal(mode,'st_pair j1-j2') |
---|
[597] | 858 | ref_j=0; |
---|
| 859 | elseif strcmp(get(handles.ref_j,'Visible'),'on') |
---|
| 860 | ref_j=str2double(get(handles.ref_j,'String')); |
---|
| 861 | end |
---|
| 862 | if isempty(ref_j) |
---|
| 863 | ref_j=1; |
---|
| 864 | end |
---|
[609] | 865 | CivInputData=get(handles.civ_input,'UserData'); |
---|
[597] | 866 | TimeUnit=get(handles.TimeUnit,'String'); |
---|
[633] | 867 | Time=CivInputData.Time; |
---|
[597] | 868 | checkframe=strcmp(TimeUnit,'frame'); |
---|
| 869 | |
---|
| 870 | %% case with no Civ1 operation, netcdf files need to exist for reading |
---|
| 871 | displ_pair={''}; |
---|
[609] | 872 | nbpair=200;%default |
---|
[597] | 873 | select=ones(size(1:nbpair));%flag for displayed pairs =1 for display |
---|
| 874 | |
---|
| 875 | %% determine the menu display in .ListPairCiv1 |
---|
[1020] | 876 | switch mode_selected |
---|
[774] | 877 | case 'series(Di)' |
---|
[597] | 878 | for ipair=1:nbpair |
---|
| 879 | if select(ipair) |
---|
| 880 | displ_pair{ipair}=['Di= ' num2str(-floor(ipair/2)) '|' num2str(ceil(ipair/2))]; |
---|
[883] | 881 | displ_pair_dt{ipair}=displ_pair{ipair}; |
---|
[774] | 882 | if ~checkframe |
---|
| 883 | if size(Time,1)>=ref_i+1+ceil(ipair/2) && size(Time,2)>=ref_j+1&& ref_i-floor(ipair/2)>=0 && ref_j>=0 |
---|
| 884 | dt=Time(ref_i+1+ceil(ipair/2),ref_j+1)-Time(ref_i+1-floor(ipair/2),ref_j+1);%Time interval dtref_j+1 |
---|
[883] | 885 | displ_pair_dt{ipair}=[displ_pair_dt{ipair} ' :dt= ' num2str(dt*1000)]; |
---|
[774] | 886 | end |
---|
[597] | 887 | else |
---|
[635] | 888 | dt=ipair/1000; |
---|
[883] | 889 | displ_pair_dt{ipair}=[displ_pair_dt{ipair} ' :dt= ' num2str(ipair)]; |
---|
[774] | 890 | end |
---|
[597] | 891 | else |
---|
[883] | 892 | displ_pair{ipair}='...'; |
---|
| 893 | displ_pair_dt{ipair}='...'; %pair not displayed in the menu |
---|
[597] | 894 | end |
---|
| 895 | end |
---|
[774] | 896 | case 'series(Dj)' |
---|
[597] | 897 | for ipair=1:nbpair |
---|
| 898 | if select(ipair) |
---|
| 899 | displ_pair{ipair}=['Dj= ' num2str(-floor(ipair/2)) '|' num2str(ceil(ipair/2))]; |
---|
[883] | 900 | displ_pair_dt{ipair}=displ_pair{ipair}; |
---|
[774] | 901 | if ~checkframe |
---|
| 902 | if size(Time,2)>=ref_j+1+ceil(ipair/2) && size(Time,1)>=ref_i+1 && ref_j-floor(ipair/2)>=0 && ref_i>=0 |
---|
| 903 | dt=Time(ref_i+1,ref_j+1+ceil(ipair/2))-Time(ref_i+1,ref_j+1-floor(ipair/2));%Time interval dtref_j+1 |
---|
[883] | 904 | displ_pair_dt{ipair}=[displ_pair_dt{ipair} ' :dt= ' num2str(dt*1000)]; |
---|
[774] | 905 | end |
---|
[635] | 906 | else |
---|
| 907 | dt=ipair/1000; |
---|
[883] | 908 | displ_pair_dt{ipair}=[displ_pair_dt{ipair} ' :dt= ' num2str(dt*1000)]; |
---|
[774] | 909 | end |
---|
[597] | 910 | else |
---|
| 911 | displ_pair{ipair}='...'; %pair not displayed in the menu |
---|
[883] | 912 | displ_pair_dt{ipair}='...'; %pair not displayed in the menu |
---|
[597] | 913 | end |
---|
| 914 | end |
---|
[774] | 915 | case 'pair j1-j2'%case of pairs |
---|
[776] | 916 | MinIndex_j=str2num(get(handles.MinIndex_j,'String')); |
---|
| 917 | MaxIndex_j=str2num(get(handles.MaxIndex_j,'String')); |
---|
[774] | 918 | index_pair=0; |
---|
| 919 | %get all the Time intervals in bursts |
---|
[918] | 920 | displ_pair_dt=''; |
---|
[774] | 921 | for numod_a=MinIndex_j:MaxIndex_j-1 %nbfield2 always >=2 for 'pair j1-j2' mode |
---|
| 922 | for numod_b=(numod_a+1):MaxIndex_j |
---|
| 923 | index_pair=index_pair+1; |
---|
| 924 | displ_pair{index_pair}=['j= ' num2stra(numod_a,nom_type_ima) '-' num2stra(numod_b,nom_type_ima)]; |
---|
[884] | 925 | displ_pair_dt{index_pair}=displ_pair{index_pair}; |
---|
[774] | 926 | dt(index_pair)=numod_b-numod_a;%default dt |
---|
| 927 | if size(Time,1)>ref_i && size(Time,2)>numod_b % && ~checkframe |
---|
| 928 | dt(index_pair)=Time(ref_i+1,numod_b+1)-Time(ref_i+1,numod_a+1);% Time interval dt |
---|
[883] | 929 | displ_pair_dt{index_pair}=[displ_pair_dt{index_pair} ' :dt= ' num2str(dt(index_pair)*1000)]; |
---|
[774] | 930 | end |
---|
[597] | 931 | end |
---|
[774] | 932 | |
---|
[597] | 933 | end |
---|
[918] | 934 | if index_pair ~=0 |
---|
[774] | 935 | [tild,indsort]=sort(dt); |
---|
| 936 | displ_pair=displ_pair(indsort); |
---|
[883] | 937 | displ_pair_dt=displ_pair_dt(indsort); |
---|
[918] | 938 | end |
---|
[774] | 939 | case 'displacement' |
---|
[1033] | 940 | % displ_pair={'Di=Dj=0'}; |
---|
| 941 | % displ_pair_dt={'Di=Dj=0'}; |
---|
| 942 | set(handles.PairIndices,'Visible','off') |
---|
[597] | 943 | end |
---|
[1033] | 944 | if index==1 && ~strcmp(mode_selected,'displacement') |
---|
[883] | 945 | set(handles.ListPairCiv1,'String',displ_pair_dt'); |
---|
[597] | 946 | end |
---|
| 947 | |
---|
[758] | 948 | %% determine the default selection in the pair menu for Civ1 |
---|
[881] | 949 | %ichoice=find(select,1);% index of first selected pair |
---|
| 950 | %if (isempty(ichoice) || ichoice < 1); ichoice=1; end; |
---|
[883] | 951 | end_pair=regexp(PairCiv1Init,' :dt='); |
---|
| 952 | if ~isempty(end_pair) |
---|
| 953 | PairCiv1Init=PairCiv1Init(1:end_pair-1); |
---|
| 954 | end |
---|
[881] | 955 | ichoice=find(strcmp(PairCiv1Init,displ_pair'),1); |
---|
[880] | 956 | if ~isempty(ichoice) |
---|
[597] | 957 | set(handles.ListPairCiv1,'Value',ichoice);% first valid pair proposed by default in the menu |
---|
[880] | 958 | else |
---|
| 959 | set(handles.ListPairCiv1,'Value',1) |
---|
[597] | 960 | end |
---|
[758] | 961 | |
---|
| 962 | %% determine the default selection in the pair menu for Civ2 |
---|
[1033] | 963 | if ~strcmp(mode_selected,'displacement') |
---|
[758] | 964 | if strcmp(get(handles.ListPairCiv2,'Visible'),'on') |
---|
[883] | 965 | end_pair=regexp(PairCiv2Init,' :dt='); |
---|
| 966 | if ~isempty(end_pair) |
---|
| 967 | PairCiv2Init=PairCiv2Init(1:end_pair-1); |
---|
| 968 | end |
---|
[881] | 969 | ichoice=find(strcmp(PairCiv2Init,displ_pair'),1); |
---|
| 970 | if ~isempty(ichoice) |
---|
| 971 | set(handles.ListPairCiv2,'Value',ichoice);% first valid pair proposed by default in the menu |
---|
| 972 | else |
---|
| 973 | set(handles.ListPairCiv2,'Value',1) |
---|
[597] | 974 | end |
---|
[758] | 975 | else |
---|
| 976 | set(handles.ListPairCiv2,'Value',get(handles.ListPairCiv1,'Value'))% initiate the choice of Civ2 as a reproduction of if civ1 |
---|
[597] | 977 | end |
---|
[883] | 978 | set(handles.ListPairCiv2,'String',displ_pair_dt'); |
---|
[1033] | 979 | end |
---|
[758] | 980 | set(gcf,'Pointer','arrow')% Indicate that the process is finished |
---|
[597] | 981 | |
---|
| 982 | |
---|
| 983 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 984 | % Callbacks in the uipanel Reference Indices |
---|
| 985 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 986 | %------------------------------------------------------------------------ |
---|
[645] | 987 | function MinIndex_i_Callback(hObject, eventdata, handles) |
---|
[597] | 988 | %------------------------------------------------------------------------ |
---|
[645] | 989 | first_i=str2double(get(handles.MinIndex_i,'String')); |
---|
[597] | 990 | set(handles.ref_i,'String', num2str(first_i))% reference index for pair dt = first index |
---|
| 991 | ref_i_Callback(hObject, eventdata, handles)%refresh dispaly of dt for pairs (in case of non constant dt) |
---|
| 992 | |
---|
[776] | 993 | % %------------------------------------------------------------------------ |
---|
| 994 | % function MinIndex_j_Callback(hObject, eventdata, handles) |
---|
| 995 | % %------------------------------------------------------------------------ |
---|
| 996 | % first_j=str2num(get(handles.MinIndex_j,'String')); |
---|
| 997 | % set(handles.ref_j,'String', num2str(first_j))% reference index for pair dt = first index |
---|
| 998 | % ref_j_Callback(hObject, eventdata, handles)%refresh dispaly of dt for pairs (in case of non constant dt) |
---|
[597] | 999 | |
---|
| 1000 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 1001 | % Callbacks in the uipanel Civ1 |
---|
| 1002 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 1003 | %------------------------------------------------------------------------ |
---|
| 1004 | % --- Executes on button press in SearchRange: determine the search range num_SearchBoxSize_1,num_SearchBoxSize_2 |
---|
| 1005 | function SearchRange_Callback(hObject, eventdata, handles) |
---|
| 1006 | %------------------------------------------------------------------------ |
---|
| 1007 | %determine pair numbers |
---|
| 1008 | if strcmp(get(handles.num_UMin,'Visible'),'off') |
---|
| 1009 | set(handles.u_title,'Visible','on') |
---|
| 1010 | set(handles.v_title,'Visible','on') |
---|
| 1011 | set(handles.num_UMin,'Visible','on') |
---|
| 1012 | set(handles.num_UMax,'Visible','on') |
---|
| 1013 | set(handles.num_VMin,'Visible','on') |
---|
| 1014 | set(handles.num_VMax,'Visible','on') |
---|
[854] | 1015 | %set(handles.CoordUnit,'Visible','on') |
---|
| 1016 | %set(handles.TimeUnit,'Visible','on') |
---|
| 1017 | %set(handles.slash_title,'Visible','on') |
---|
[597] | 1018 | set(handles.min_title,'Visible','on') |
---|
| 1019 | set(handles.max_title,'Visible','on') |
---|
| 1020 | set(handles.unit_title,'Visible','on') |
---|
| 1021 | else |
---|
| 1022 | get_search_range(hObject, eventdata, handles) |
---|
| 1023 | end |
---|
| 1024 | |
---|
| 1025 | %------------------------------------------------------------------------ |
---|
| 1026 | % --- determine the search range num_SearchBoxSize_1,num_SearchBoxSize_2 and shift |
---|
| 1027 | function get_search_range(hObject, eventdata, handles) |
---|
| 1028 | %------------------------------------------------------------------------ |
---|
| 1029 | param_civ1=read_GUI(handles.Civ1); |
---|
| 1030 | umin=param_civ1.UMin; |
---|
| 1031 | umax=param_civ1.UMax; |
---|
| 1032 | vmin=param_civ1.VMin; |
---|
| 1033 | vmax=param_civ1.VMax; |
---|
| 1034 | %switch min_title and max_title in case of error |
---|
| 1035 | if umax<=umin |
---|
| 1036 | umin_old=umin; |
---|
| 1037 | umin=umax; |
---|
| 1038 | umax=umin_old; |
---|
| 1039 | set(handles.num_UMin,'String', num2str(umin)) |
---|
| 1040 | set(handles.num_UMax,'String', num2str(umax)) |
---|
| 1041 | end |
---|
| 1042 | if vmax<=vmin |
---|
| 1043 | vmin_old=vmin; |
---|
| 1044 | vmin=vmax; |
---|
| 1045 | vmax=vmin_old; |
---|
| 1046 | set(handles.num_VMin,'String', num2str(vmin)) |
---|
| 1047 | set(handles.num_VMax,'String', num2str(vmax)) |
---|
| 1048 | end |
---|
| 1049 | if ~(isempty(umin)||isempty(umax)||isempty(vmin)||isempty(vmax)) |
---|
| 1050 | shiftx=round((umin+umax)/2); |
---|
| 1051 | shifty=round((vmin+vmax)/2); |
---|
[854] | 1052 | isx=(umax+2-shiftx)*2+param_civ1.CorrBoxSize(1); |
---|
[597] | 1053 | isx=2*ceil(isx/2)+1; |
---|
[854] | 1054 | isy=(vmax+2-shifty)*2+param_civ1.CorrBoxSize(2); |
---|
[597] | 1055 | isy=2*ceil(isy/2)+1; |
---|
| 1056 | set(handles.num_SearchBoxShift_1,'String',num2str(shiftx)); |
---|
| 1057 | set(handles.num_SearchBoxShift_2,'String',num2str(shifty)); |
---|
| 1058 | set(handles.num_SearchBoxSize_1,'String',num2str(isx)); |
---|
| 1059 | set(handles.num_SearchBoxSize_2,'String',num2str(isy)); |
---|
| 1060 | end |
---|
| 1061 | |
---|
[851] | 1062 | %------------------------------------------------------------------------ |
---|
[856] | 1063 | % --- Executes on selection in menu CorrSmooth. |
---|
[851] | 1064 | function num_CorrSmooth_Callback(hObject, eventdata, handles) |
---|
[873] | 1065 | set(handles.ConfigSource,'String','NEW') |
---|
[856] | 1066 | set(handles.OK,'BackgroundColor',[1 0 1]) |
---|
[851] | 1067 | %------------------------------------------------------------------------ |
---|
| 1068 | |
---|
[859] | 1069 | % --- Executes on button press in CheckDeformation. |
---|
| 1070 | function CheckDeformation_Callback(hObject, eventdata, handles) |
---|
[862] | 1071 | set(handles.ConfigSource,'String','NEW') |
---|
[859] | 1072 | set(handles.OK,'BackgroundColor',[1 0 1]) |
---|
[885] | 1073 | handles_CoorSmooth=findobj(get(handles.Civ2,'children'),'Tag','num_CorrSmooth'); |
---|
| 1074 | if get(handles.CheckDeformation,'Value') |
---|
| 1075 | set(handles_CoorSmooth,'Visible','off') |
---|
[883] | 1076 | else |
---|
[885] | 1077 | set(handles_CoorSmooth,'Visible','on') |
---|
[883] | 1078 | end |
---|
[859] | 1079 | |
---|
[597] | 1080 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 1081 | % Callbacks in the uipanel Fix1 |
---|
| 1082 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 1083 | %------------------------------------------------------------------------ |
---|
[851] | 1084 | % % --- Executes on button press in CheckMask. |
---|
| 1085 | % function get_mask_fix1_Callback(hObject, eventdata, handles) |
---|
| 1086 | % %------------------------------------------------------------------------ |
---|
| 1087 | % maskval=get(handles.CheckMask,'Value'); |
---|
| 1088 | % if isequal(maskval,0) |
---|
| 1089 | % set(handles.Mask,'String','') |
---|
| 1090 | % else |
---|
| 1091 | % mask_displ='no mask'; %default |
---|
| 1092 | % filebase=get(handles.RootPath,'String'); |
---|
| 1093 | % [nbslice, flag_mask]=get_mask(filebase,handles); |
---|
| 1094 | % if isequal(flag_mask,1) |
---|
| 1095 | % mask_displ=[num2str(nbslice) 'mask']; |
---|
| 1096 | % elseif get(handles.ListCompareMode,'Value')>1 & ~isequal(mask_displ,'no mask')% look for the second mask series |
---|
| 1097 | % filebase_a=get(handles.RootFile_1,'String'); |
---|
| 1098 | % [nbslice_a, flag_mask_a]=get_mask(filebase_a,handles); |
---|
| 1099 | % if isequal(flag_mask_a,0) || ~isequal(nbslice_a,nbslice) |
---|
| 1100 | % mask_displ='no mask'; |
---|
| 1101 | % end |
---|
| 1102 | % end |
---|
| 1103 | % if isequal(mask_displ,'no mask') |
---|
| 1104 | % [FileName, PathName, filterindex] = uigetfile( ... |
---|
| 1105 | % {'*.png', ' (*.png)'; |
---|
| 1106 | % '*.png', '.png files '; ... |
---|
| 1107 | % '*.*', 'All Files (*.*)'}, ... |
---|
| 1108 | % 'Pick a mask file *.png',filebase); |
---|
| 1109 | % mask_displ=fullfile(PathName,FileName); |
---|
| 1110 | % if ~exist(mask_displ,'file') |
---|
| 1111 | % mask_displ='no mask'; |
---|
| 1112 | % end |
---|
| 1113 | % end |
---|
| 1114 | % if isequal(mask_displ,'no mask') |
---|
| 1115 | % set(handles.CheckMask,'Value',0) |
---|
| 1116 | % set(handles.CheckMask,'Value',0) |
---|
| 1117 | % set(handles.CheckMask,'Value',0) |
---|
| 1118 | % else |
---|
| 1119 | % %set(handles.CheckMask,'Value',1) |
---|
| 1120 | % set(handles.CheckMask,'Value',1) |
---|
| 1121 | % end |
---|
| 1122 | % set(handles.Mask,'String',mask_displ) |
---|
| 1123 | % set(handles.Mask,'String',mask_displ) |
---|
| 1124 | % set(handles.Mask,'String',mask_displ) |
---|
| 1125 | % end |
---|
[597] | 1126 | |
---|
[851] | 1127 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 1128 | % Callbacks in the uipanel Civ2 |
---|
| 1129 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
[597] | 1130 | %------------------------------------------------------------------------ |
---|
| 1131 | % --- Executes on button press in CheckMask: select box for mask option |
---|
| 1132 | function get_mask_civ2_Callback(hObject, eventdata, handles) |
---|
| 1133 | %------------------------------------------------------------------------ |
---|
| 1134 | maskval=get(handles.CheckMask,'Value'); |
---|
| 1135 | if isequal(maskval,0) |
---|
| 1136 | set(handles.Mask,'String','') |
---|
| 1137 | else |
---|
| 1138 | mask_displ='no mask'; %default |
---|
| 1139 | filebase=get(handles.RootPath,'String'); |
---|
| 1140 | [nbslice, flag_mask]=get_mask(filebase,handles); |
---|
| 1141 | if isequal(flag_mask,1) |
---|
| 1142 | mask_displ=[num2str(nbslice) 'mask']; |
---|
| 1143 | elseif get(handles.ListCompareMode,'Value')>1 & ~isequal(mask_displ,'no mask')% look for the second mask series |
---|
| 1144 | filebase_a=get(handles.RootFile_1,'String'); |
---|
| 1145 | [nbslice_a, flag_mask_a]=get_mask(filebase_a,handles); |
---|
| 1146 | if isequal(flag_mask_a,0) || ~isequal(nbslice_a,nbslice) |
---|
| 1147 | mask_displ='no mask'; |
---|
| 1148 | end |
---|
| 1149 | end |
---|
| 1150 | if isequal(mask_displ,'no mask') |
---|
| 1151 | [FileName, PathName, filterindex] = uigetfile( ... |
---|
| 1152 | {'*.png', ' (*.png)'; |
---|
| 1153 | '*.png', '.png files '; ... |
---|
| 1154 | '*.*', 'All Files (*.*)'}, ... |
---|
| 1155 | 'Pick a mask file *.png',filebase); |
---|
| 1156 | mask_displ=fullfile(PathName,FileName); |
---|
| 1157 | if ~exist(mask_displ,'file') |
---|
| 1158 | mask_displ='no mask'; |
---|
| 1159 | end |
---|
| 1160 | end |
---|
| 1161 | if isequal(mask_displ,'no mask') |
---|
| 1162 | set(handles.CheckMask,'Value',0) |
---|
| 1163 | set(handles.CheckMask,'Value',0) |
---|
| 1164 | else |
---|
| 1165 | set(handles.CheckMask,'Value',1) |
---|
| 1166 | end |
---|
| 1167 | set(handles.Mask,'String',mask_displ) |
---|
| 1168 | end |
---|
| 1169 | |
---|
[851] | 1170 | % %------------------------------------------------------------------------ |
---|
| 1171 | % % --- Executes on button press in CheckMask. |
---|
| 1172 | % function get_mask_fix2_Callback(hObject, eventdata, handles) |
---|
| 1173 | % %------------------------------------------------------------------------ |
---|
| 1174 | % maskval=get(handles.CheckMask,'Value'); |
---|
| 1175 | % if isequal(maskval,0) |
---|
| 1176 | % set(handles.Mask,'String','') |
---|
| 1177 | % else |
---|
| 1178 | % mask_displ='no mask'; %default |
---|
| 1179 | % filebase=get(handles.RootPath,'String'); |
---|
| 1180 | % [nbslice, flag_mask]=get_mask(filebase,handles); |
---|
| 1181 | % if isequal(flag_mask,1) |
---|
| 1182 | % mask_displ=[num2str(nbslice) 'mask']; |
---|
| 1183 | % elseif get(handles.ListCompareMode,'Value')>1 & ~isequal(mask_displ,'no mask')% look for the second mask series |
---|
| 1184 | % filebase_a=get(handles.RootFile_1,'String'); |
---|
| 1185 | % [nbslice_a, flag_mask_a]=get_mask(filebase_a,handles); |
---|
| 1186 | % if isequal(flag_mask_a,0) || ~isequal(nbslice_a,nbslice) |
---|
| 1187 | % mask_displ='no mask'; |
---|
| 1188 | % end |
---|
| 1189 | % end |
---|
| 1190 | % if isequal(mask_displ,'no mask') |
---|
| 1191 | % [FileName, PathName, filterindex] = uigetfile( ... |
---|
| 1192 | % {'*.png', ' (*.png)'; |
---|
| 1193 | % '*.png', '.png files '; ... |
---|
| 1194 | % '*.*', 'All Files (*.*)'}, ... |
---|
| 1195 | % 'Pick a mask file *.png',filebase); |
---|
| 1196 | % mask_displ=fullfile(PathName,FileName); |
---|
| 1197 | % if ~exist(mask_displ,'file') |
---|
| 1198 | % mask_displ='no mask'; |
---|
| 1199 | % end |
---|
| 1200 | % end |
---|
| 1201 | % if isequal(mask_displ,'no mask') |
---|
| 1202 | % set(handles.CheckMask,'Value',0) |
---|
| 1203 | % end |
---|
| 1204 | % set(handles.Mask,'String',mask_displ) |
---|
| 1205 | % end |
---|
[597] | 1206 | |
---|
| 1207 | %------------------------------------------------------------------------ |
---|
| 1208 | % --- function called to look for mask files |
---|
| 1209 | function [nbslice, flag_mask]=get_mask(filebase,handles) |
---|
| 1210 | %------------------------------------------------------------------------ |
---|
| 1211 | %detect mask files, images with appropriate file base |
---|
| 1212 | %[filebase '_' xx 'mask'], xx=nbslice |
---|
| 1213 | %flag_mask=1 indicates detection |
---|
| 1214 | |
---|
| 1215 | flag_mask=0;%default |
---|
| 1216 | nbslice=1; |
---|
| 1217 | |
---|
[604] | 1218 | % subdir=get(handles.Civ1_ImageB,'String'); |
---|
[597] | 1219 | [Path,Name]=fileparts(filebase); |
---|
| 1220 | if ~isdir(Path) |
---|
| 1221 | msgbox_uvmat('ERROR','no path for input files') |
---|
| 1222 | return |
---|
| 1223 | end |
---|
| 1224 | % currentdir=pwd; |
---|
| 1225 | % cd(Path);%move in the dir of the root name filebase |
---|
| 1226 | maskfiles=dir(fullfile(Path,[Name '_*mask_*.png']));%look for mask files |
---|
| 1227 | % cd(currentdir);%come back to the current working directory |
---|
| 1228 | if ~isempty(maskfiles) |
---|
| 1229 | % msgbox_uvmat('ERROR','no mask available, to create it use Tools/Make mask in the upper menu bar of uvmat') |
---|
| 1230 | % else |
---|
| 1231 | flag_mask=1; |
---|
| 1232 | maskname=maskfiles(1).name;% take the first mask file in the list |
---|
| 1233 | [Path2,Name,ext]=fileparts(maskname); |
---|
| 1234 | Namedouble=double(Name); |
---|
| 1235 | val=(48>Namedouble)|(Namedouble>57);% select the non-numerical characters |
---|
| 1236 | ind_mask=findstr('mask',Name); |
---|
| 1237 | i=ind_mask-1; |
---|
| 1238 | while val(i)==0 && i>0 |
---|
| 1239 | i=i-1; |
---|
| 1240 | end |
---|
| 1241 | nbslice=str2double(Name(i+1:ind_mask-1)); |
---|
| 1242 | if ~isnan(nbslice) && Name(i)=='_' |
---|
| 1243 | flag_mask=1; |
---|
| 1244 | else |
---|
| 1245 | msgbox_uvmat('ERROR',['bad mask file ' Name ext ' found in ' Path2]) |
---|
| 1246 | return |
---|
| 1247 | nbslice=1; |
---|
| 1248 | end |
---|
| 1249 | end |
---|
| 1250 | |
---|
| 1251 | %------------------------------------------------------------------------ |
---|
| 1252 | % --- function called to look for grid files |
---|
| 1253 | function [nbslice, flag_grid]=get_grid(filebase,handles) |
---|
| 1254 | %------------------------------------------------------------------------ |
---|
| 1255 | flag_grid=0;%default |
---|
| 1256 | nbslice=1; |
---|
| 1257 | [Path,Name]=fileparts(filebase); |
---|
| 1258 | currentdir=pwd; |
---|
| 1259 | cd(Path);%move in the dir of the root name filebase |
---|
| 1260 | gridfiles=dir([Name '_*grid_*.grid']);%look for grid files |
---|
| 1261 | cd(currentdir);%come back to the current working directory |
---|
| 1262 | if ~isempty(gridfiles) |
---|
| 1263 | flag_grid=1; |
---|
| 1264 | gridname=gridfiles(1).name;% take the first grid file in the list |
---|
| 1265 | [Path2,Name,ext]=fileparts(gridname); |
---|
| 1266 | Namedouble=double(Name); |
---|
| 1267 | val=(48>Namedouble)|(Namedouble>57);% select the non-numerical characters |
---|
| 1268 | ind_grid=findstr('grid',Name); |
---|
| 1269 | i=ind_grid-1; |
---|
| 1270 | while val(i)==0 && i>0 |
---|
| 1271 | i=i-1; |
---|
| 1272 | end |
---|
| 1273 | nbslice=str2double(Name(i+1:ind_grid-1)); |
---|
| 1274 | if ~isnan(nbslice) && Name(i)=='_' |
---|
| 1275 | flag_grid=1; |
---|
| 1276 | else |
---|
| 1277 | msgbox_uvmat('ERROR',['bad grid file ' Name ext ' found in ' Path2]) |
---|
| 1278 | return |
---|
| 1279 | nbslice=1; |
---|
| 1280 | end |
---|
| 1281 | end |
---|
| 1282 | |
---|
| 1283 | %------------------------------------------------------------------------ |
---|
| 1284 | % --- transform numbers to letters |
---|
| 1285 | function str=num2stra(num,nom_type) |
---|
| 1286 | %------------------------------------------------------------------------ |
---|
| 1287 | if isempty(nom_type) |
---|
| 1288 | str=''; |
---|
| 1289 | elseif strcmp(nom_type(end),'a') |
---|
| 1290 | str=char(96+num); |
---|
| 1291 | elseif strcmp(nom_type(end),'A') |
---|
| 1292 | str=char(96+num); |
---|
| 1293 | elseif isempty(nom_type(2:end))%a single index |
---|
| 1294 | str=''; |
---|
| 1295 | else |
---|
| 1296 | str=num2str(num); |
---|
| 1297 | end |
---|
| 1298 | |
---|
| 1299 | % %------------------------------------------------------------------------ |
---|
| 1300 | % % --- Executes on button press in ListSubdirCiv1. |
---|
| 1301 | % function ListSubdirCiv1_Callback(hObject, eventdata, handles) |
---|
| 1302 | % %------------------------------------------------------------------------ |
---|
| 1303 | % list_subdir_civ1=get(handles.ListSubdirCiv1,'String'); |
---|
| 1304 | % val=get(handles.ListSubdirCiv1,'Value'); |
---|
| 1305 | % SubDir=list_subdir_civ1{val}; |
---|
| 1306 | % if strcmp(SubDir,'new...') |
---|
| 1307 | % if get(handles.CheckCiv1,'Value') |
---|
| 1308 | % SubDir='CIV_INPUT'; %default subdirectory |
---|
| 1309 | % else |
---|
| 1310 | % msgbox_uvmat('ERROR','select CheckCiv1 to perform a new civ_input operation') |
---|
| 1311 | % return |
---|
| 1312 | % end |
---|
| 1313 | % end |
---|
[604] | 1314 | % set(handles.Civ1_ImageB,'String',SubDir); |
---|
[597] | 1315 | % errormsg=find_netcpair_civ(handles,1); |
---|
| 1316 | % if ~isempty(errormsg) |
---|
| 1317 | % msgbox_uvmat('ERROR',errormsg) |
---|
| 1318 | % end |
---|
| 1319 | % |
---|
| 1320 | %------------------------------------------------------------------------ |
---|
| 1321 | % % --- Executes on button press in ListSubdirCiv2. |
---|
| 1322 | % function ListSubdirCiv2_Callback(hObject, eventdata, handles) |
---|
| 1323 | % %------------------------------------------------------------------------ |
---|
| 1324 | % list_subdir_civ2=get(handles.ListSubdirCiv2,'String'); |
---|
| 1325 | % val=get(handles.ListSubdirCiv2,'Value'); |
---|
| 1326 | % SubDir=list_subdir_civ2{val}; |
---|
| 1327 | % if strcmp(SubDir,'new...') |
---|
| 1328 | % if get(handles.CheckCiv2,'Value') |
---|
| 1329 | % SubDir='CIV_INPUT'; %default subdirectory |
---|
| 1330 | % else |
---|
| 1331 | % msgbox_uvmat('ERROR','select CheckCiv2 to perform a new civ_input operation') |
---|
| 1332 | % return |
---|
| 1333 | % end |
---|
| 1334 | % end |
---|
[604] | 1335 | % set(handles.Civ2_ImageA,'String',SubDir); |
---|
[597] | 1336 | |
---|
| 1337 | %------------------------------------------------------------------------ |
---|
| 1338 | % --- Executes on button press in CheckGrid. |
---|
| 1339 | function CheckGrid_Callback(hObject, eventdata, handles) |
---|
| 1340 | %------------------------------------------------------------------------ |
---|
| 1341 | value=get(hObject,'Value'); |
---|
| 1342 | hparent=get(hObject,'parent');%handles of the parent panel |
---|
| 1343 | hchildren=get(hparent,'children'); |
---|
| 1344 | handle_txtbox=findobj(hchildren,'tag','Grid');% look for the grid name box in the same panel |
---|
| 1345 | handle_dx=findobj(hchildren,'tag','num_Dx'); |
---|
| 1346 | handle_dy=findobj(hchildren,'tag','num_Dy'); |
---|
| 1347 | handle_title_dx=findobj(hchildren,'tag','title_Dx'); |
---|
| 1348 | handle_title_dy=findobj(hchildren,'tag','title_Dy'); |
---|
| 1349 | testgrid=0; |
---|
| 1350 | filegrid=''; |
---|
| 1351 | if value |
---|
[665] | 1352 | hseries=findobj(allchild(0),'Tag','series'); |
---|
| 1353 | hhseries=guidata(hseries); |
---|
| 1354 | InputTable=get(hhseries.InputTable,'Data'); |
---|
| 1355 | ind_A=1;% line index of the (first) image series |
---|
| 1356 | if strcmp(InputTable{1,5},'.nc'); |
---|
| 1357 | ind_A=2; |
---|
| 1358 | end |
---|
| 1359 | filebase=InputTable{ind_A,1}; |
---|
[597] | 1360 | [nbslice, flag_grid]=get_grid(filebase,handles);% look for a grid with appropriate name |
---|
| 1361 | if isequal(flag_grid,1) |
---|
| 1362 | filegrid=[num2str(nbslice) 'grid']; |
---|
| 1363 | testgrid=1; |
---|
| 1364 | else % browse for a grid |
---|
| 1365 | filegrid=get(hObject,'UserData');%look for previous grid name stored as UserData |
---|
| 1366 | if exist(filegrid,'file') |
---|
| 1367 | filebase=filegrid; |
---|
| 1368 | end |
---|
[665] | 1369 | filegrid = uigetfile_uvmat('pick a grid file .grid:',filebase,'.grid'); |
---|
[597] | 1370 | set(hObject,'UserData',filegrid);%store for future use |
---|
[665] | 1371 | if ~isempty(filegrid) |
---|
[597] | 1372 | testgrid=1; |
---|
[665] | 1373 | end |
---|
| 1374 | set(hObject,'UserData',filegrid);%store for future use |
---|
[597] | 1375 | end |
---|
| 1376 | end |
---|
| 1377 | if testgrid |
---|
| 1378 | set(handle_dx,'Visible','off'); |
---|
| 1379 | set(handle_dy,'Visible','off'); |
---|
| 1380 | set(handle_title_dy,'Visible','off'); |
---|
| 1381 | set(handle_title_dx,'Visible','off'); |
---|
| 1382 | set(handle_txtbox,'Visible','on') |
---|
| 1383 | set(handle_txtbox,'String',filegrid) |
---|
| 1384 | else |
---|
| 1385 | set(hObject,'Value',0); |
---|
| 1386 | set(handle_dx,'Visible','on'); |
---|
| 1387 | set(handle_dy,'Visible','on'); |
---|
| 1388 | set(handle_title_dy,'Visible','on'); |
---|
| 1389 | set(handle_title_dx,'Visible','on'); |
---|
| 1390 | set(handle_txtbox,'Visible','off') |
---|
| 1391 | end |
---|
| 1392 | |
---|
| 1393 | %% if hObject is on the checkciv1 frame, duplicate action for checkciv2 frame |
---|
| 1394 | PanelName=get(hparent,'tag'); |
---|
| 1395 | if strcmp(PanelName,'Civ1') |
---|
| 1396 | hchildren=get(handles.Civ2,'children'); |
---|
| 1397 | handle_checkbox=findobj(hchildren,'tag','CheckGrid'); |
---|
| 1398 | handle_txtbox=findobj(hchildren,'tag','Grid'); |
---|
| 1399 | handle_dx=findobj(hchildren,'tag','num_Dx'); |
---|
| 1400 | handle_dy=findobj(hchildren,'tag','num_Dy'); |
---|
| 1401 | handle_title_dx=findobj(hchildren,'tag','title_Dx'); |
---|
| 1402 | handle_title_dy=findobj(hchildren,'tag','title_Dy'); |
---|
| 1403 | set(handle_checkbox,'UserData',filegrid);%store for future use |
---|
| 1404 | if testgrid |
---|
| 1405 | set(handle_checkbox,'Value',1); |
---|
| 1406 | set(handle_dx,'Visible','off'); |
---|
| 1407 | set(handle_dy,'Visible','off'); |
---|
| 1408 | set(handle_title_dx,'Visible','off'); |
---|
| 1409 | set(handle_title_dy,'Visible','off'); |
---|
| 1410 | set(handle_txtbox,'Visible','on') |
---|
| 1411 | set(handle_txtbox,'String',filegrid) |
---|
| 1412 | end |
---|
| 1413 | end |
---|
[873] | 1414 | set(handles.ConfigSource,'String','NEW') |
---|
[856] | 1415 | set(handles.OK,'BackgroundColor',[1 0 1]) |
---|
[918] | 1416 | |
---|
[597] | 1417 | %------------------------------------------------------------------------ |
---|
| 1418 | % --- Executes on button press in CheckMask: common to all panels (civ1, Civ2..) |
---|
| 1419 | function CheckMask_Callback(hObject, eventdata, handles) |
---|
| 1420 | %------------------------------------------------------------------------ |
---|
| 1421 | value=get(hObject,'Value'); |
---|
| 1422 | hparent=get(hObject,'parent'); |
---|
| 1423 | parent_tag=get(hparent,'Tag'); |
---|
| 1424 | hchildren=get(hparent,'children'); |
---|
| 1425 | handle_txtbox=findobj(hchildren,'tag','Mask');% look for the mask name box in the same panel |
---|
[1010] | 1426 | handle_NbSlice=findobj(hchildren,'tag','num_NbSlice');% look for the mask name box in the same panel |
---|
[597] | 1427 | testmask=0; |
---|
| 1428 | if value |
---|
[665] | 1429 | hseries=findobj(allchild(0),'Tag','series'); |
---|
| 1430 | hhseries=guidata(hseries); |
---|
| 1431 | InputTable=get(hhseries.InputTable,'Data'); |
---|
[851] | 1432 | ind_A=1;% line index of the (first) image series |
---|
[665] | 1433 | if strcmp(InputTable{1,5},'.nc'); |
---|
| 1434 | ind_A=2; |
---|
| 1435 | end |
---|
[1020] | 1436 | % browse for a mask |
---|
[851] | 1437 | filemask= uigetfile_uvmat('pick a mask image file:',InputTable{ind_A,1},'image'); |
---|
[1010] | 1438 | [FilePath,FileName,Ext]=fileparts(filemask); |
---|
| 1439 | [RootPath,SubDir,RootFile,i1_series,i2,j1,j2,NomType]=find_file_series(FilePath,[FileName,Ext]); |
---|
| 1440 | if strcmp(NomType,'_1') |
---|
| 1441 | NbSlice=i1_series(1,2,end); |
---|
[1018] | 1442 | set(handles.num_NbSlice,'String',num2str(NbSlice)) |
---|
[1010] | 1443 | end |
---|
[597] | 1444 | set(hObject,'UserData',filemask);%store for future use |
---|
[665] | 1445 | if ~isempty(filemask) |
---|
[597] | 1446 | testmask=1; |
---|
[1020] | 1447 | end |
---|
[597] | 1448 | end |
---|
| 1449 | if testmask |
---|
[851] | 1450 | set(handles.Mask,'Visible','on') |
---|
| 1451 | set(handles.Mask,'String',filemask) |
---|
[597] | 1452 | set(handles.CheckMask,'Value',1) |
---|
[1010] | 1453 | if strcmp(NomType,'_1') |
---|
| 1454 | set(handles.num_NbSlice,'Visible','on') |
---|
| 1455 | end |
---|
[597] | 1456 | else |
---|
| 1457 | set(hObject,'Value',0); |
---|
| 1458 | set(handle_txtbox,'Visible','off') |
---|
[1010] | 1459 | set(handles.num_NbSlice,'Visible','off') |
---|
[597] | 1460 | end |
---|
[873] | 1461 | set(handles.ConfigSource,'String','NEW') |
---|
| 1462 | set(handles.ConfigSource,'BackgroundColor',[1 0 1]) |
---|
[597] | 1463 | |
---|
[851] | 1464 | % %------------------------------------------------------------------------ |
---|
| 1465 | % % --- Executes on button press in get_gridpatch1. |
---|
| 1466 | % function get_gridpatch1_Callback(hObject, eventdata, handles) |
---|
| 1467 | % %------------------------------------------------------------------------ |
---|
| 1468 | % filebase=get(handles.RootPath,'String'); |
---|
| 1469 | % [FileName, PathName, filterindex] = uigetfile( ... |
---|
| 1470 | % {'*.grid', ' (*.grid)'; |
---|
| 1471 | % '*.grid', '.grid files '; ... |
---|
| 1472 | % '*.*', 'All Files (*.*)'}, ... |
---|
| 1473 | % 'Pick a file',filebase); |
---|
| 1474 | % filegrid=fullfile(PathName,FileName); |
---|
| 1475 | % set(handles.grid_patch1,'string',filegrid); |
---|
| 1476 | % set(hObject,'BackgroundColor',[1 0 1]) |
---|
[597] | 1477 | |
---|
| 1478 | %------------------------------------------------------------------------ |
---|
| 1479 | % --- STEREO Interp |
---|
| 1480 | function cmd=RUN_STINTERP(stinterpBin,filename_A_nc,filename_B_nc,filename_nc,nx_patch,ny_patch,rho_patch,subdomain_patch,thresh_value,xmlA,xmlB) |
---|
| 1481 | %------------------------------------------------------------------------ |
---|
| 1482 | namelog=[filename_nc(1:end-3) '_stinterp.log']; |
---|
| 1483 | cmd=[stinterpBin ' -f1 ' filename_A_nc ' -f2 ' filename_B_nc ' -f ' filename_nc ... |
---|
| 1484 | ' -m ' nx_patch ' -n ' ny_patch ' -ro ' rho_patch ' -nopt ' subdomain_patch ' -c1 ' xmlA ' -c2 ' xmlB ' -xy x -Nfy 1024 > ' namelog ' 2>&1']; % redirect standard output to the log file |
---|
| 1485 | |
---|
| 1486 | % %------------------------------------------------------------------------ |
---|
| 1487 | % %--read images and convert them to the uint16 format used for PIV |
---|
| 1488 | % function A=read_image(filename,type_ima,num,movieobject) |
---|
| 1489 | % %------------------------------------------------------------------------ |
---|
| 1490 | % %num is the view number needed for an avi movie |
---|
| 1491 | % switch type_ima |
---|
| 1492 | % case 'movie' |
---|
| 1493 | % A=read(movieobject,num); |
---|
| 1494 | % case 'avi' |
---|
| 1495 | % mov=aviread(filename,num); |
---|
| 1496 | % A=frame2im(mov(1)); |
---|
| 1497 | % case 'multimage' |
---|
| 1498 | % A=imread(filename,num); |
---|
| 1499 | % case 'image' |
---|
| 1500 | % A=imread(filename); |
---|
| 1501 | % end |
---|
| 1502 | % siz=size(A); |
---|
| 1503 | % if length(siz)==3;%color images |
---|
| 1504 | % A=sum(double(A),3); |
---|
| 1505 | % A=uint16(A); |
---|
| 1506 | % end |
---|
| 1507 | |
---|
| 1508 | |
---|
| 1509 | %------------------------------------------------------------------------ |
---|
| 1510 | % --- Executes on button press in get_ref_fix1. |
---|
| 1511 | function get_ref_fix1_Callback(hObject, eventdata, handles) |
---|
| 1512 | %------------------------------------------------------------------------ |
---|
| 1513 | filebase=get(handles.RootPath,'String'); |
---|
| 1514 | [FileName, PathName, filterindex] = uigetfile( ... |
---|
| 1515 | {'*.nc', ' (*.nc)'; |
---|
| 1516 | '*.nc', 'netcdf files '; ... |
---|
| 1517 | '*.*', 'All Files (*.*)'}, ... |
---|
| 1518 | 'Pick a file',filebase); |
---|
| 1519 | |
---|
| 1520 | fileinput=[PathName FileName]; |
---|
| 1521 | sizf=size(fileinput); |
---|
| 1522 | if (~ischar(fileinput)||~isequal(sizf(1),1)),return;end %stop if fileinput not a character string |
---|
| 1523 | %[Path,File,field_count,str2,str_a,str_b,ref.ext,ref.nom_type,ref.subdir]=name2display(fileinput); |
---|
| 1524 | [Path,ref.subdir,File,ref.num1,ref.num2,ref.num_a,ref.num_b,ref.ext,ref.nom_type]=fileparts_uvmat(fileinput); |
---|
| 1525 | ref.filebase=fullfile(Path,File); |
---|
| 1526 | % ref.num_a=stra2num(str_a); |
---|
| 1527 | % ref.num_b=stra2num(str_b); |
---|
| 1528 | % ref.num1=str2double(field_count); |
---|
| 1529 | % ref.num2=str2double(str2); |
---|
| 1530 | browse=[];%initialisation |
---|
| 1531 | if ~isequal(ref.ext,'.nc') |
---|
| 1532 | msgbox_uvmat('ERROR','the reference file must be in netcdf format (*.nc)') |
---|
| 1533 | return |
---|
| 1534 | end |
---|
| 1535 | set(handles.ref_fix1,'String',[fullfile(ref.subdir,File) '....nc']); |
---|
| 1536 | set(handles.ref_fix1,'UserData',ref) |
---|
| 1537 | menu_field{1}='civ1'; |
---|
| 1538 | Data=nc2struct(fileinput,[]); |
---|
| 1539 | if isfield(Data,'patch') && isequal(Data.patch,1) |
---|
| 1540 | menu_field{2}='filter1'; |
---|
| 1541 | end |
---|
| 1542 | if isfield(Data,'civ2') && isequal(Data.civ2,1) |
---|
| 1543 | menu_field{3}='civ2'; |
---|
| 1544 | end |
---|
| 1545 | if isfield(Data,'patch2') && isequal(Data.patch2,1) |
---|
| 1546 | menu_field{4}='filter2'; |
---|
| 1547 | end |
---|
| 1548 | set(handles.field_ref1,'String',menu_field); |
---|
| 1549 | set(handles.field_ref1,'Value',length(menu_field)); |
---|
| 1550 | set(handles.num_MinVel,'Value',2); |
---|
| 1551 | set(handles.num_MinVel,'String','1');%default threshold |
---|
| 1552 | set(handles.ref_fix1,'Enable','on') |
---|
| 1553 | |
---|
| 1554 | %------------------------------------------------------------------------ |
---|
| 1555 | % --- Executes on button press in get_ref_fix2. |
---|
| 1556 | function get_ref_fix2_Callback(hObject, eventdata, handles) |
---|
| 1557 | %------------------------------------------------------------------------ |
---|
| 1558 | if isequal(get(handles.get_ref_fix2,'Value'),1) |
---|
| 1559 | filebase=get(handles.RootPath,'String'); |
---|
| 1560 | [FileName, PathName, filterindex] = uigetfile( ... |
---|
| 1561 | {'*.nc', ' (*.nc)'; |
---|
| 1562 | '*.nc', 'netcdf files '; ... |
---|
| 1563 | '*.*', 'All Files (*.*)'}, ... |
---|
| 1564 | 'Pick a file',filebase); |
---|
| 1565 | fileinput=[PathName FileName]; |
---|
| 1566 | sizf=size(fileinput); |
---|
| 1567 | if (~ischar(fileinput)||~isequal(sizf(1),1)),return;end %stop if fileinput not a character string |
---|
| 1568 | %[Path,File,field_count,str2,str_a,str_b,ref.ext,ref.nom_type,ref.subdir]=name2display(fileinput); |
---|
| 1569 | [Path,ref.subdir,File,ref.num1,ref.num2,ref.num_a,ref.num_b,ref.ext,ref.nom_type]=fileparts_uvmat(fileinput); |
---|
| 1570 | ref.filebase=fullfile(Path,File); |
---|
[692] | 1571 | % ref.num_a=stra2num(str_a); |
---|
| 1572 | % ref.num_b=stra2num(str_b); |
---|
| 1573 | % ref.num1=str2num(field_count); |
---|
| 1574 | % ref.num2=str2num(str2); |
---|
[597] | 1575 | browse=[];%initialisation |
---|
| 1576 | if ~isequal(ref.ext,'.nc') |
---|
| 1577 | msgbox_uvmat('ERROR','the reference file must be in netcdf format (*.nc)') |
---|
| 1578 | return |
---|
| 1579 | end |
---|
| 1580 | set(handles.ref_fix2,'String',[fullfile(ref.subdir,File) '....nc']); |
---|
| 1581 | set(handles.ref_fix2,'UserData',ref) |
---|
| 1582 | menu_field{1}='civ1'; |
---|
| 1583 | Data=nc2struct(fileinput,[]); |
---|
| 1584 | if isfield(Data,'patch') && isequal(Data.patch,1) |
---|
| 1585 | menu_field{2}='filter1'; |
---|
| 1586 | end |
---|
| 1587 | if isfield(Data,'civ2') && isequal(Data.civ2,1) |
---|
| 1588 | menu_field{3}='civ2'; |
---|
| 1589 | end |
---|
| 1590 | if isfield(Data,'patch2') && isequal(Data.patch2,1) |
---|
| 1591 | menu_field{4}='filter2'; |
---|
| 1592 | end |
---|
| 1593 | set(handles.field_ref2,'String',menu_field); |
---|
| 1594 | set(handles.field_ref2,'Value',length(menu_field)); |
---|
| 1595 | set(handles.num_MinVel,'Value',2); |
---|
| 1596 | set(handles.num_MinVel,'String','1');%default threshold |
---|
| 1597 | set(handles.ref_fix2,'Enable','on') |
---|
| 1598 | set(handles.ref_fix2,'Visible','on') |
---|
| 1599 | set(handles.field_ref2,'Visible','on') |
---|
| 1600 | else |
---|
| 1601 | set(handles.ref_fix2,'Visible','off') |
---|
| 1602 | set(handles.field_ref2,'Visible','off') |
---|
| 1603 | end |
---|
| 1604 | |
---|
| 1605 | %------------------------------------------------------------------------ |
---|
| 1606 | function ref_fix1_Callback(hObject, eventdata, handles) |
---|
| 1607 | %------------------------------------------------------------------------ |
---|
| 1608 | set(handles.num_MinVel,'Value',1); |
---|
| 1609 | set(handles.field_ref1,'Value',1) |
---|
| 1610 | set(handles.field_ref1,'String',{' '}) |
---|
| 1611 | set(handles.ref_fix1,'UserData',[]); |
---|
| 1612 | set(handles.ref_fix1,'String',''); |
---|
| 1613 | set(handles.thresh_vel1,'String','0'); |
---|
| 1614 | |
---|
| 1615 | %------------------------------------------------------------------------ |
---|
| 1616 | function ref_fix2_Callback(hObject, eventdata, handles) |
---|
| 1617 | %------------------------------------------------------------------------ |
---|
| 1618 | set(handles.num_MinVel,'Value',1); |
---|
| 1619 | set(handles.field_ref2,'Value',1) |
---|
| 1620 | set(handles.field_ref2,'String',{' '}) |
---|
| 1621 | set(handles.ref_fix2,'UserData',[]); |
---|
| 1622 | set(handles.ref_fix2,'String',''); |
---|
| 1623 | set(handles.num_MinVel,'String','0'); |
---|
| 1624 | |
---|
| 1625 | %------------------------------------------------------------------------ |
---|
| 1626 | % --- TO ABANDON Executes on button press in test_stereo1. |
---|
| 1627 | function CheckStereo_Callback(hObject, eventdata, handles) |
---|
| 1628 | %------------------------------------------------------------------------ |
---|
| 1629 | hparent=get(hObject,'parent'); |
---|
| 1630 | parent_tag=get(hparent,'Tag'); |
---|
| 1631 | hchildren=get(hparent,'children'); |
---|
| 1632 | handle_txtbox=findobj(hchildren,'tag','txt_Mask'); |
---|
| 1633 | if isequal(get(hObject,'Value'),0) |
---|
| 1634 | set(handles.num_SubDomainSize,'Visible','on') |
---|
| 1635 | set(handles.num_FieldSmooth,'Visible','on') |
---|
| 1636 | else |
---|
| 1637 | set(handles.num_SubDomainSize,'Visible','off') |
---|
| 1638 | set(handles.num_FieldSmooth,'Visible','off') |
---|
| 1639 | end |
---|
| 1640 | |
---|
| 1641 | % %------------------------------------------------------------------------ |
---|
| 1642 | % % --- Executes on button press in CheckStereo. |
---|
| 1643 | % function StereoCheck_Callback(hObject, eventdata, handles) |
---|
| 1644 | % %------------------------------------------------------------------------ |
---|
| 1645 | % if isequal(get(handles.CheckStereo,'Value'),0) |
---|
| 1646 | % set(handles.num_subdomainsize,'Visible','on') |
---|
| 1647 | % set(handles.num_FieldSmooth,'Visible','on') |
---|
| 1648 | % else |
---|
[651] | 1649 | |
---|
[597] | 1650 | % set(handles.num_subdomainsize,'Visible','off') |
---|
| 1651 | % set(handles.num_FieldSmooth,'Visible','off') |
---|
| 1652 | % end |
---|
| 1653 | |
---|
[774] | 1654 | |
---|
| 1655 | |
---|
| 1656 | %------------------------------------------------------------------------ |
---|
| 1657 | %----function introduced for the correlation window figure, activated by deleting this window |
---|
| 1658 | function closeview_field(gcbo,eventdata) |
---|
[597] | 1659 | %------------------------------------------------------------------------ |
---|
[774] | 1660 | hview_field=findobj(allchild(0),'tag','view_field');% look for view_field |
---|
| 1661 | if ~isempty(hview_field) |
---|
| 1662 | delete(hview_field) |
---|
| 1663 | end |
---|
| 1664 | |
---|
| 1665 | %------------------------------------------------------------------------ |
---|
| 1666 | % --- Executes on button press in CheckThreshold. |
---|
| 1667 | function CheckThreshold_Callback(hObject, eventdata, handles) |
---|
| 1668 | %------------------------------------------------------------------------ |
---|
| 1669 | huipanel=get(hObject,'parent'); |
---|
| 1670 | obj(1)=findobj(huipanel,'Tag','num_MinIma'); |
---|
| 1671 | obj(2)=findobj(huipanel,'Tag','num_MaxIma'); |
---|
| 1672 | obj(3)=findobj(huipanel,'Tag','title_Threshold'); |
---|
| 1673 | if get(hObject,'Value') |
---|
| 1674 | set(obj,'Visible','on') |
---|
| 1675 | else |
---|
| 1676 | set(obj,'Visible','off') |
---|
| 1677 | end |
---|
[873] | 1678 | set(handles.ConfigSource,'String','NEW') |
---|
[856] | 1679 | set(handles.OK,'BackgroundColor',[1 0 1]) |
---|
[774] | 1680 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 1681 | %%%%%%%%%%%%%% TEST functions |
---|
| 1682 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
---|
| 1683 | %------------------------------------------------------------------------ |
---|
[597] | 1684 | % --- Executes on button press in TestCiv1: prepare the image correlation function |
---|
[774] | 1685 | % activated by mouse motion |
---|
[597] | 1686 | function TestCiv1_Callback(hObject, eventdata, handles) |
---|
| 1687 | %------------------------------------------------------------------------ |
---|
| 1688 | drawnow |
---|
| 1689 | if get(handles.TestCiv1,'Value') |
---|
[855] | 1690 | set(handles.TestCiv1,'BackgroundColor',[1 1 0])% paint TestCiv1 button to yellow to confirm civ launch |
---|
[873] | 1691 | set(handles.CheckFix1,'value',0)% desactivate next step |
---|
| 1692 | set(handles.CheckPatch1,'value',0)% desactivate next step |
---|
| 1693 | set(handles.CheckCiv2,'value',0)% desactivate next step |
---|
| 1694 | set(handles.CheckFix2,'value',0)% desactivate next step |
---|
| 1695 | set(handles.CheckPatch2,'value',0)% desactivate next step |
---|
| 1696 | update_CivOptions(handles,0) |
---|
[860] | 1697 | hseries=findobj(allchild(0),'Tag','series'); |
---|
| 1698 | Param=read_GUI(hseries); |
---|
| 1699 | Param.Action.RUN=1; |
---|
| 1700 | Param.ActionInput=read_GUI(handles.civ_input); |
---|
[862] | 1701 | if isfield(Param.ActionInput,'Fix1') |
---|
| 1702 | Param.ActionInput=rmfield(Param.ActionInput,'Fix1'); |
---|
| 1703 | end |
---|
| 1704 | if isfield(Param.ActionInput,'Patch1') |
---|
| 1705 | Param.ActionInput=rmfield(Param.ActionInput,'Patch1'); |
---|
| 1706 | end |
---|
| 1707 | if isfield(Param.ActionInput,'Civ2')%remove options that may be selected beyond Patch1 |
---|
| 1708 | Param.ActionInput=rmfield(Param.ActionInput,'Civ2'); |
---|
| 1709 | end |
---|
| 1710 | if isfield(Param.ActionInput,'Fix2') |
---|
| 1711 | Param.ActionInput=rmfield(Param.ActionInput,'Fix2'); |
---|
| 1712 | end |
---|
| 1713 | if isfield(Param.ActionInput,'Patch2') |
---|
| 1714 | Param.ActionInput=rmfield(Param.ActionInput,'Patch2'); |
---|
| 1715 | end |
---|
[860] | 1716 | if isfield(Param,'OutputSubDir') |
---|
| 1717 | Param=rmfield(Param,'OutputSubDir'); %remove output file option from civ_series |
---|
| 1718 | end |
---|
| 1719 | Param.ActionInput.Civ1.CorrSmooth=0;% launch Civ1 with no data point (to get the image names for A and B) |
---|
[897] | 1720 | Param.IndexRange.first_i=str2num(get(handles.ref_i,'String')); |
---|
| 1721 | Param.IndexRange.last_i=str2num(get(handles.ref_i,'String')); |
---|
| 1722 | if strcmp(get(handles.ref_j,'Visible'),'on') |
---|
| 1723 | Param.IndexRange.first_j=str2num(get(handles.ref_j,'String')); |
---|
| 1724 | Param.IndexRange.last_j=Param.IndexRange.first_j; |
---|
| 1725 | else |
---|
| 1726 | Param.IndexRange.first_j=1; |
---|
| 1727 | Param.IndexRange.last_j=1; |
---|
| 1728 | end |
---|
[860] | 1729 | [Data,errormsg]=civ_series(Param);% get the civ1+fix1 results |
---|
[861] | 1730 | if ~isempty(errormsg), return, end % rmq: error msg displayed in civ_series |
---|
| 1731 | |
---|
[860] | 1732 | %% create image data ImageData for display |
---|
| 1733 | ImageData.ListVarName={'ny','nx','A'}; |
---|
| 1734 | ImageData.VarDimName= {'ny','nx',{'ny','nx'}}; |
---|
[1097] | 1735 | ImageData.VarAttribute{1}.Role='coord_y'; |
---|
| 1736 | ImageData.VarAttribute{2}.Role='coord_x'; |
---|
| 1737 | ImageData.VarAttribute{3}.Role='scalar'; |
---|
[860] | 1738 | ImageData.A=imread(Data.Civ1_ImageA); % read the first image |
---|
| 1739 | if ndims(ImageData.A)==3 %case of color image |
---|
| 1740 | ImageData.VarDimName= {'ny','nx',{'ny','nx','rgb'}}; |
---|
| 1741 | end |
---|
| 1742 | ImageData.ny=[size(ImageData.A,1) 1]; |
---|
| 1743 | ImageData.nx=[1 size(ImageData.A,2)]; |
---|
| 1744 | ImageData.CoordUnit='pixel';% used to set equal scaling for x and y in image dispa=ly |
---|
[855] | 1745 | |
---|
[860] | 1746 | %% create the figure view_field for image visualization |
---|
| 1747 | hview_field=view_field(ImageData); %view the image in the GUI view_field |
---|
| 1748 | set(0,'CurrentFigure',hview_field) |
---|
| 1749 | hhview_field=guihandles(hview_field); |
---|
| 1750 | set(hview_field,'CurrentAxes',hhview_field.PlotAxes) |
---|
| 1751 | ViewData=get(hview_field,'UserData'); |
---|
| 1752 | ViewData.CivHandle=handles.civ_input;% indicate the handle of the civ GUI in view_field |
---|
| 1753 | ViewData.PlotAxes.X=Data.Civ1_X'; |
---|
| 1754 | ViewData.PlotAxes.Y=Data.Civ1_Y'; |
---|
| 1755 | ViewData.PlotAxes.B=imread(Data.Civ1_ImageB);%store the second image in the UserData of the GUI view_field |
---|
| 1756 | set(hview_field,'UserData',ViewData)% store the info in the UserData of image view_field |
---|
[855] | 1757 | |
---|
| 1758 | %% look for a current figure for image correlation display |
---|
| 1759 | corrfig=findobj(allchild(0),'tag','corrfig'); |
---|
[597] | 1760 | if isempty(corrfig) |
---|
| 1761 | corrfig=figure; |
---|
| 1762 | set(corrfig,'tag','corrfig') |
---|
| 1763 | set(corrfig,'name','image correlation') |
---|
| 1764 | set(corrfig,'DeleteFcn',{@closeview_field})% |
---|
[692] | 1765 | set(handles.TestCiv1,'BackgroundColor',[1 0 0]) |
---|
| 1766 | else |
---|
| 1767 | set(handles.TestCiv1,'BackgroundColor',[1 0 0])% paint button to red |
---|
| 1768 | corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display |
---|
| 1769 | if ~isempty(corrfig) |
---|
| 1770 | delete(corrfig) |
---|
| 1771 | end |
---|
| 1772 | hview_field=findobj(allchild(0),'tag','view_field');% look for view_field |
---|
| 1773 | if ~isempty(hview_field) |
---|
| 1774 | delete(hview_field) |
---|
| 1775 | end |
---|
[597] | 1776 | end |
---|
[774] | 1777 | else |
---|
| 1778 | hview_field=findobj(allchild(0),'Tag','view_field'); %view the image in the GUI view_field |
---|
| 1779 | if ~isempty(hview_field) |
---|
| 1780 | delete(hview_field) |
---|
| 1781 | end |
---|
[597] | 1782 | end |
---|
| 1783 | |
---|
[774] | 1784 | % -------------------------------------------------------------------- |
---|
| 1785 | % --- Executes on button press in TestPatch1. |
---|
| 1786 | % -------------------------------------------------------------------- |
---|
| 1787 | function TestPatch1_Callback(hObject, eventdata, handles) |
---|
[1141] | 1788 | msgbox_uvmat('WARNING','open the civ file and run "series/test_patch_tps" ') |
---|
[597] | 1789 | |
---|
[1141] | 1790 | % if get(handles.TestPatch1,'Value')% if TestPatch1 is activated |
---|
| 1791 | % hseries=findobj(allchild(0),'Tag','series'); |
---|
| 1792 | % Param=read_GUI(hseries); |
---|
| 1793 | % CivDir=fullfile(Param.OutputPath,Param.Experiment,Param.Device,[Param.OutputSubDir Param.OutputDirExt]); |
---|
| 1794 | % % ListXml=dir(CivXmlDir); |
---|
| 1795 | % if exist(CivDir,'dir') |
---|
| 1796 | % CivFile=uigetfile_uvmat('pick .nc file with civ1-fix1 data',CivDir,'.nc'); |
---|
| 1797 | % [Field,VelTypeOut,errormsg]=read_civdata(CivFile) |
---|
| 1798 | % for ilist=1:numel(Field.ListGlobalAttribute) |
---|
| 1799 | % r=regexp(Field.ListGlobalAttribute{ilist},'Civ1_(?<field>.+)','names');% \D = not a digit, \d =digi |
---|
| 1800 | % if ~isempty(r) |
---|
| 1801 | % ParamTest.Civ1.(r.field)=(Field.(['Civ1_' r.field])); |
---|
| 1802 | % end |
---|
| 1803 | % r=regexp(Field.ListGlobalAttribute{ilist},'Fix1_(?<field>.+)','names');% \D = not a digit, \d =digi |
---|
| 1804 | % if ~isempty(r) |
---|
| 1805 | % ParamTest.Fix1.(r.field)=(Field.(['Fix1_' r.field])); |
---|
| 1806 | % end |
---|
| 1807 | % end |
---|
| 1808 | % fill_GUI(ParamTest,handles.civ_input)% fill the elements of the GUI series with the input parameters |
---|
| 1809 | % drawnow |
---|
| 1810 | % update_CivOptions(handles,0) |
---|
| 1811 | % |
---|
| 1812 | % set(handles.TestPatch1,'BackgroundColor',[1 1 0])%paint TestPatch1 button in yellow to indicate activation |
---|
| 1813 | % % set(handles.Civ1,'BackgroundColor',[1 1 0])% indicate civ1 calculation is performed |
---|
| 1814 | % Param.Action.RUN=1; |
---|
| 1815 | % Param.ActionInput=read_GUI(handles.civ_input); |
---|
| 1816 | % Param.ActionInput.CheckCiv1=0;% do not repeat Civ1 computation |
---|
| 1817 | % if isfield(Param.ActionInput,'Civ2')%remove options that may be selected beyond Patch1 |
---|
| 1818 | % Param.ActionInput=rmfield(Param.ActionInput,'Civ2'); |
---|
| 1819 | % end |
---|
| 1820 | % if isfield(Param.ActionInput,'Fix2') |
---|
| 1821 | % Param.ActionInput=rmfield(Param.ActionInput,'Fix2'); |
---|
| 1822 | % end |
---|
| 1823 | % if isfield(Param.ActionInput,'Patch2') |
---|
| 1824 | % Param.ActionInput=rmfield(Param.ActionInput,'Patch2'); |
---|
| 1825 | % end |
---|
| 1826 | % if isfield(Param,'OutputSubDir') |
---|
| 1827 | % Param=rmfield(Param,'OutputSubDir'); %remove output file option from civ_series |
---|
| 1828 | % end |
---|
| 1829 | % ParamPatch1=Param.ActionInput.Patch1; %store the patch1 parameters |
---|
| 1830 | % Param.ActionInput=rmfield(Param.ActionInput,'Patch1');% does not execute Patch |
---|
| 1831 | % Param.IndexRange.first_i=str2num(get(handles.ref_i,'String')); |
---|
| 1832 | % Param.IndexRange.last_i=Param.IndexRange.first_i; |
---|
| 1833 | % if strcmp(get(handles.ref_j,'Visible'),'on') |
---|
| 1834 | % Param.IndexRange.first_j=str2num(get(handles.ref_j,'String')); |
---|
| 1835 | % Param.IndexRange.last_j=Param.IndexRange.first_j; |
---|
| 1836 | % else |
---|
| 1837 | % Param.IndexRange.first_j=1; |
---|
| 1838 | % Param.IndexRange.last_j=1; |
---|
| 1839 | % end |
---|
| 1840 | % [Data,errormsg]=civ_series(Param);% get the civ1+fix1 results |
---|
| 1841 | % bckcolor=get(handles.civ_input,'Color'); |
---|
| 1842 | % set(handles.Civ1,'BackgroundColor',bckcolor)% indicate civ1 calculation is finished |
---|
| 1843 | % |
---|
| 1844 | % %% prepare Param for iterative Patch processing without input file reading |
---|
| 1845 | % Param.Civ1_X=Data.Civ1_X; |
---|
| 1846 | % Param.Civ1_Y=Data.Civ1_Y; |
---|
| 1847 | % Param.Civ1_U=Data.Civ1_U; |
---|
| 1848 | % Param.Civ1_V=Data.Civ1_V; |
---|
| 1849 | % Param.Civ1_FF=Data.Civ1_FF; |
---|
| 1850 | % Param=rmfield(Param,'InputTable');%desactivate input file reading |
---|
| 1851 | % if isfield(Param.ActionInput,'Civ1') |
---|
| 1852 | % Param.ActionInput=rmfield(Param.ActionInput,'Civ1');%desactivate civ1: remove civ1 input param if relevant |
---|
| 1853 | % end |
---|
| 1854 | % if isfield(Param.ActionInput,'Fix1') |
---|
| 1855 | % Param.ActionInput=rmfield(Param.ActionInput,'Fix1');%desactivate fix1:remove fix1 input param if relevant |
---|
| 1856 | % end |
---|
| 1857 | % SmoothingParam=(ParamPatch1.FieldSmooth/10)*2.^(1:7);%scan the smoothing param from 1/10 to 12.8 current value |
---|
| 1858 | % NbGood=numel(find(Data.Civ1_FF==0)); |
---|
| 1859 | % NbExclude=zeros(1,7);% initialize the set of smoothing parameters |
---|
| 1860 | % DiffVel=zeros(1,7);% initialize the rms difference between patch and civ |
---|
| 1861 | % Param.ActionInput.Patch1=ParamPatch1;% retrieve Patch1 parameters |
---|
| 1862 | % for irho=1:7 |
---|
| 1863 | % Param.ActionInput.Patch1.FieldSmooth=SmoothingParam(irho); |
---|
| 1864 | % [Data,errormsg]= civ_series(Param);%apply the processing fct |
---|
| 1865 | % if ~isempty(errormsg) |
---|
| 1866 | % msgbox_uvmat('ERROR',errormsg) |
---|
| 1867 | % return |
---|
| 1868 | % end |
---|
| 1869 | % ind_good=find(Data.Civ1_FF==0); |
---|
| 1870 | % Civ1_U_Diff=Data.Civ1_U(ind_good)-Data.Civ1_U_smooth(ind_good); |
---|
| 1871 | % Civ1_V_Diff=Data.Civ1_V(ind_good)-Data.Civ1_V_smooth(ind_good); |
---|
| 1872 | % DiffVel(irho)=sqrt(mean(Civ1_U_Diff.*Civ1_U_Diff+Civ1_V_Diff.*Civ1_V_Diff)); |
---|
| 1873 | % NbExclude(irho)=(NbGood-numel(ind_good))/NbGood; |
---|
| 1874 | % end |
---|
| 1875 | % figure(1) |
---|
| 1876 | % semilogx(SmoothingParam,DiffVel,'b',SmoothingParam,NbExclude,'r',SmoothingParam,0.2*ones(size(SmoothingParam)),'m') |
---|
| 1877 | % grid on |
---|
| 1878 | % legend('rms velocity diff. Patch1-Civ1 (pixels)','proportion of excluded vectors (between 0 to 1)','recommended diff Patch1-Civ1') |
---|
| 1879 | % xlabel('smoothing parameter') |
---|
| 1880 | % ylabel('smoothing effect') |
---|
| 1881 | % set(handles.TestPatch1,'BackgroundColor',[0 1 0]) |
---|
| 1882 | % else |
---|
| 1883 | % corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display |
---|
| 1884 | % if ~isempty(corrfig) |
---|
| 1885 | % delete(corrfig) |
---|
| 1886 | % end |
---|
| 1887 | % hview_field=findobj(allchild(0),'tag','view_field');% look for view_field |
---|
| 1888 | % if ~isempty(hview_field) |
---|
| 1889 | % delete(hview_field) |
---|
| 1890 | % end |
---|
| 1891 | % end |
---|
| 1892 | % else |
---|
| 1893 | % msgbox_uvmat('ERROR','no output file: first perform a civ1-fix1 computation') |
---|
| 1894 | % return |
---|
| 1895 | % end |
---|
[1098] | 1896 | |
---|
[851] | 1897 | %------------------------------------------------------------------------ |
---|
[774] | 1898 | % --- Executes on button press in TestCiv2. |
---|
[851] | 1899 | %------------------------------------------------------------------------ |
---|
[774] | 1900 | function TestCiv2_Callback(hObject, eventdata, handles) |
---|
[851] | 1901 | drawnow |
---|
| 1902 | if get(handles.TestCiv2,'Value') |
---|
| 1903 | set(handles.TestCiv2,'BackgroundColor',[1 1 0])% paint TestCiv1 button to yellow to confirm civ launch |
---|
[873] | 1904 | set(handles.CheckFix2,'value',0)% desactivate next step |
---|
| 1905 | set(handles.CheckPatch2,'value',0)% desactivate next step |
---|
| 1906 | update_CivOptions(handles,0) |
---|
[856] | 1907 | hseries=findobj(allchild(0),'Tag','series'); |
---|
| 1908 | Param=read_GUI(hseries); |
---|
| 1909 | Param.Action.RUN=1; |
---|
| 1910 | Param.ActionInput=read_GUI(handles.civ_input); |
---|
[859] | 1911 | if isfield(Param,'OutputSubDir') |
---|
[856] | 1912 | Param=rmfield(Param,'OutputSubDir'); %remove output file option from civ_series |
---|
[859] | 1913 | end |
---|
| 1914 | Param.ActionInput.Civ2.CorrSmooth=0;% launch Civ2 with no data point (to get the image names for A and B) |
---|
[858] | 1915 | set(handles.Civ1,'BackgroundColor',[1 1 0]) |
---|
[859] | 1916 | set(handles.Fix1,'BackgroundColor',[1 1 0]) |
---|
| 1917 | set(handles.Patch1,'BackgroundColor',[1 1 0]) |
---|
[876] | 1918 | Param.IndexRange.first_i=str2num(get(handles.ref_i,'String')); |
---|
| 1919 | Param.IndexRange.last_i=Param.IndexRange.first_i; |
---|
| 1920 | if strcmp(get(handles.ref_j,'Visible'),'on') |
---|
| 1921 | Param.IndexRange.first_j=str2num(get(handles.ref_j,'String')); |
---|
| 1922 | Param.IndexRange.last_j=Param.IndexRange.first_j; |
---|
| 1923 | else |
---|
| 1924 | Param.IndexRange.first_j=1; |
---|
| 1925 | Param.IndexRange.last_j=1; |
---|
| 1926 | end |
---|
[856] | 1927 | [Data,errormsg]=civ_series(Param);% get the civ1+fix1 results |
---|
| 1928 | |
---|
| 1929 | %% create image data ImageData for display |
---|
| 1930 | ImageData.ListVarName={'ny','nx','A'}; |
---|
| 1931 | ImageData.VarDimName= {'ny','nx',{'ny','nx'}}; |
---|
| 1932 | ImageData.A=imread(Data.Civ2_ImageA); % read the first image |
---|
| 1933 | if ndims(ImageData.A)==3 %case of color image |
---|
| 1934 | ImageData.VarDimName= {'ny','nx',{'ny','nx','rgb'}}; |
---|
| 1935 | end |
---|
| 1936 | ImageData.ny=[size(ImageData.A,1) 1]; |
---|
| 1937 | ImageData.nx=[1 size(ImageData.A,2)]; |
---|
| 1938 | ImageData.CoordUnit='pixel';% used to set equal scaling for x and y in image dispa=ly |
---|
| 1939 | |
---|
| 1940 | %% create the figure view_field for image visualization |
---|
| 1941 | hview_field=view_field(ImageData); %view the image in the GUI view_field |
---|
[851] | 1942 | set(0,'CurrentFigure',hview_field) |
---|
[858] | 1943 | % plot the boundaries of the subdomains used for patch |
---|
[856] | 1944 | for isub=1:size(Data.Civ1_SubRange,3); |
---|
| 1945 | pos_x=Data.Civ1_SubRange(1,1,isub); |
---|
| 1946 | pos_y=Data.Civ1_SubRange(2,1,isub); |
---|
| 1947 | width=Data.Civ1_SubRange(1,2,isub)-Data.Civ1_SubRange(1,1,isub); |
---|
| 1948 | height=Data.Civ1_SubRange(2,2,isub)-Data.Civ1_SubRange(2,1,isub); |
---|
| 1949 | rectangle('Position',[pos_x pos_y width height],'EdgeColor',[0 0 1]) |
---|
| 1950 | end |
---|
[858] | 1951 | hhview_field=guihandles(hview_field);% |
---|
[851] | 1952 | set(hview_field,'CurrentAxes',hhview_field.PlotAxes) |
---|
[859] | 1953 | ViewData=get(hview_field,'UserData'); % get the currently plotted field (the image A) |
---|
[858] | 1954 | % store info in the UserData of view-field |
---|
[851] | 1955 | ViewData.CivHandle=handles.civ_input;% indicate the handle of the civ GUI in view_field |
---|
[856] | 1956 | ViewData.PlotAxes.B=imread(Data.Civ2_ImageB);%store the second image in the UserData of the GUI view_field |
---|
| 1957 | ViewData.PlotAxes.X=Data.Civ2_X'; |
---|
| 1958 | ViewData.PlotAxes.Y=Data.Civ2_Y'; |
---|
[862] | 1959 | ViewData.PlotAxes.ShiftX=Data.Civ2_U';% shift at each point (from patch1) estimated by the preliminary run of civ2 |
---|
[856] | 1960 | ViewData.PlotAxes.ShiftY=Data.Civ2_V'; |
---|
| 1961 | ViewData.PlotAxes.Civ1_SubRange=Data.Civ1_SubRange; |
---|
| 1962 | ViewData.PlotAxes.Civ1_NbCentres=Data.Civ1_NbCentres; |
---|
| 1963 | ViewData.PlotAxes.Civ1_Coord_tps=Data.Civ1_Coord_tps; |
---|
| 1964 | ViewData.PlotAxes.Civ1_U_tps=Data.Civ1_U_tps; |
---|
| 1965 | ViewData.PlotAxes.Civ1_V_tps=Data.Civ1_V_tps; |
---|
| 1966 | ViewData.PlotAxes.Civ1_Dt=Data.Civ1_Dt; |
---|
[858] | 1967 | ViewData.PlotAxes.Civ2_Dt=Data.Civ2_Dt; |
---|
[856] | 1968 | set(hview_field,'UserData',ViewData)% store the info in the UserData of image view_field |
---|
[859] | 1969 | bckcolor=get(handles.civ_input,'Color'); |
---|
| 1970 | set(handles.Civ1,'BackgroundColor',bckcolor)% indicate civ1 calmculation is finished |
---|
| 1971 | set(handles.Fix1,'BackgroundColor',bckcolor) |
---|
| 1972 | set(handles.Patch1,'BackgroundColor',bckcolor) |
---|
| 1973 | drawnow |
---|
[856] | 1974 | |
---|
| 1975 | %% look for a current figure for image correlation display |
---|
| 1976 | corrfig=findobj(allchild(0),'tag','corrfig'); |
---|
[851] | 1977 | if isempty(corrfig) |
---|
| 1978 | corrfig=figure; |
---|
| 1979 | set(corrfig,'tag','corrfig') |
---|
| 1980 | set(corrfig,'name','image correlation') |
---|
| 1981 | set(corrfig,'DeleteFcn',{@closeview_field})% |
---|
| 1982 | set(handles.TestCiv1,'BackgroundColor',[1 0 0]) |
---|
| 1983 | else |
---|
| 1984 | set(handles.TestCiv1,'BackgroundColor',[1 0 0])% paint button to red |
---|
| 1985 | corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display |
---|
| 1986 | if ~isempty(corrfig) |
---|
| 1987 | delete(corrfig) |
---|
| 1988 | end |
---|
| 1989 | hview_field=findobj(allchild(0),'tag','view_field');% look for view_field |
---|
| 1990 | if ~isempty(hview_field) |
---|
| 1991 | delete(hview_field) |
---|
| 1992 | end |
---|
[856] | 1993 | end |
---|
[851] | 1994 | else |
---|
| 1995 | hview_field=findobj(allchild(0),'Tag','view_field'); %view the image in the GUI view_field |
---|
| 1996 | if ~isempty(hview_field) |
---|
| 1997 | delete(hview_field) |
---|
| 1998 | end |
---|
| 1999 | end |
---|
[597] | 2000 | |
---|
| 2001 | |
---|
[860] | 2002 | % --- Executes on button press in TestPatch2. |
---|
| 2003 | function TestPatch2_Callback(hObject, eventdata, handles) |
---|
| 2004 | if get(handles.TestPatch2,'Value')% if TestPatch2 is activated |
---|
[1141] | 2005 | msgbox_uvmat('WARNING','open the civ file and run "series/test_patch_tps" ') |
---|
[860] | 2006 | end |
---|
[1141] | 2007 | % set(handles.TestPatch2,'BackgroundColor',[1 1 0])%paint TestPatch2 button in yellow to indicate activation |
---|
| 2008 | % set(handles.Civ1,'BackgroundColor',[1 1 0])% indicate civ1 calculation is activated |
---|
| 2009 | % set(handles.Fix1,'BackgroundColor',[1 1 0])% indicate fix1 calculation is activated |
---|
| 2010 | % set(handles.Patch1,'BackgroundColor',[1 1 0])% indicate Patch1 calculation is activated |
---|
| 2011 | % set(handles.Civ2,'BackgroundColor',[1 1 0])% indicate civ2 calculation is activated |
---|
| 2012 | % set(handles.Fix2,'BackgroundColor',[1 1 0])% indicate fix2 calculation is activated |
---|
| 2013 | % hseries=findobj(allchild(0),'Tag','series'); |
---|
| 2014 | % Param=read_GUI(hseries); |
---|
| 2015 | % Param.Action.RUN=1; |
---|
| 2016 | % Param.ActionInput=read_GUI(handles.civ_input); |
---|
| 2017 | % if isfield(Param,'OutputSubDir') |
---|
| 2018 | % Param=rmfield(Param,'OutputSubDir'); %remove output file option from civ_series |
---|
| 2019 | % end |
---|
| 2020 | % ParamPatch2=Param.ActionInput.Patch2; %store the patch1 parameters |
---|
| 2021 | % Param.ActionInput=rmfield(Param.ActionInput,'Patch2');% does not execute Patch |
---|
| 2022 | % Param.IndexRange.first_i=str2num(get(handles.ref_i,'String')); |
---|
| 2023 | % Param.IndexRange.last_i=Param.IndexRange.first_i; |
---|
| 2024 | % if strcmp(get(handles.ref_j,'Visible'),'on') |
---|
| 2025 | % Param.IndexRange.first_j=str2num(get(handles.ref_j,'String')); |
---|
| 2026 | % Param.IndexRange.last_j=Param.IndexRange.first_j; |
---|
| 2027 | % else |
---|
| 2028 | % Param.IndexRange.first_j=1; |
---|
| 2029 | % Param.IndexRange.last_j=1; |
---|
| 2030 | % end |
---|
| 2031 | % [Data,errormsg]=civ_series(Param);% get the civ1+fix1 results |
---|
| 2032 | % bckcolor=get(handles.civ_input,'Color'); |
---|
| 2033 | % set(handles.Civ1,'BackgroundColor',bckcolor)% indicate civ1 calculation is finished |
---|
| 2034 | % set(handles.Fix1,'BackgroundColor',bckcolor)% indicate fix1 calculation is finished |
---|
| 2035 | % set(handles.Patch1,'BackgroundColor',bckcolor)% indicate Patch1 calculation is finished |
---|
| 2036 | % set(handles.Civ2,'BackgroundColor',bckcolor)% indicate civ2 calculation is finished |
---|
| 2037 | % set(handles.Fix2,'BackgroundColor',bckcolor)% indicate fix2 calculation is finished |
---|
| 2038 | % |
---|
| 2039 | % %% prepare Param for iterative Patch processing without input file reading |
---|
| 2040 | % Param.Civ2_X=Data.Civ2_X; |
---|
| 2041 | % Param.Civ2_Y=Data.Civ2_Y; |
---|
| 2042 | % Param.Civ2_U=Data.Civ2_U; |
---|
| 2043 | % Param.Civ2_V=Data.Civ2_V; |
---|
| 2044 | % Param.Civ2_FF=Data.Civ2_FF; |
---|
| 2045 | % Param=rmfield(Param,'InputTable');%desactivate input file reading |
---|
| 2046 | % if isfield(Param.ActionInput,'Civ1') |
---|
| 2047 | % Param.ActionInput=rmfield(Param.ActionInput,'Civ1');%desactivate civ1: remove civ1 input param if relevant |
---|
| 2048 | % end |
---|
| 2049 | % if isfield(Param.ActionInput,'Fix1') |
---|
| 2050 | % Param.ActionInput=rmfield(Param.ActionInput,'Fix1');%desactivate fix1:remove fix1 input param if relevant |
---|
| 2051 | % end |
---|
| 2052 | % if isfield(Param.ActionInput,'Patch1') |
---|
| 2053 | % Param.ActionInput=rmfield(Param.ActionInput,'Patch1');%desactivate fix1:remove fix1 input param if relevant |
---|
| 2054 | % end |
---|
| 2055 | % if isfield(Param.ActionInput,'Civ2') |
---|
| 2056 | % Param.ActionInput=rmfield(Param.ActionInput,'Civ2');%desactivate civ2: remove civ2 input param if relevant |
---|
| 2057 | % end |
---|
| 2058 | % if isfield(Param.ActionInput,'Fix2') |
---|
| 2059 | % Param.ActionInput=rmfield(Param.ActionInput,'Fix2');%desactivate fix1:remove fix1 input param if relevant |
---|
| 2060 | % end |
---|
| 2061 | % SmoothingParam=(ParamPatch2.FieldSmooth/10)*2.^(1:7);%scan the smoothing param from 1/10 to 12.8 current value |
---|
| 2062 | % NbGood=numel(find(Data.Civ2_FF==0)); |
---|
| 2063 | % NbExclude=zeros(1,7);% initialize the set of smoothing parameters |
---|
| 2064 | % DiffVel=zeros(1,7);% initialize the rms difference between patch and civ |
---|
| 2065 | % Param.ActionInput.Patch2=ParamPatch2;% retrieve Patch2 parameters |
---|
| 2066 | % for irho=1:7 |
---|
| 2067 | % Param.ActionInput.Patch2.FieldSmooth=SmoothingParam(irho); |
---|
| 2068 | % [Data,errormsg]= civ_series(Param);%apply the processing fct |
---|
| 2069 | % if ~isempty(errormsg) |
---|
| 2070 | % msgbox_uvmat('ERROR',errormsg) |
---|
| 2071 | % return |
---|
| 2072 | % end |
---|
| 2073 | % ind_good=find(Data.Civ2_FF==0); |
---|
| 2074 | % Civ2_U_Diff=Data.Civ2_U(ind_good)-Data.Civ2_U_smooth(ind_good); |
---|
| 2075 | % Civ2_V_Diff=Data.Civ2_V(ind_good)-Data.Civ2_V_smooth(ind_good); |
---|
| 2076 | % DiffVel(irho)=sqrt(mean(Civ2_U_Diff.*Civ2_U_Diff+Civ2_V_Diff.*Civ2_V_Diff)); |
---|
| 2077 | % NbExclude(irho)=(NbGood-numel(ind_good))/NbGood; |
---|
| 2078 | % end |
---|
| 2079 | % figure(1) |
---|
| 2080 | % semilogx(SmoothingParam,DiffVel,'b',SmoothingParam,NbExclude,'r',SmoothingParam,0.1*ones(size(SmoothingParam)),'m') |
---|
| 2081 | % grid on |
---|
| 2082 | % legend('rms velocity diff. Patch2-Civ2 (pixels)','proportion of excluded vectors (between 0 to 1)','recommended value diff. Patch2-Civ2') |
---|
| 2083 | % xlabel('smoothing parameter') |
---|
| 2084 | % ylabel('smoothing effect') |
---|
| 2085 | % set(handles.TestPatch2,'BackgroundColor',[0 1 0]) |
---|
| 2086 | % else |
---|
| 2087 | % corrfig=findobj(allchild(0),'tag','corrfig');% look for a current figure for image correlation display |
---|
| 2088 | % if ~isempty(corrfig) |
---|
| 2089 | % delete(corrfig) |
---|
| 2090 | % end |
---|
| 2091 | % hview_field=findobj(allchild(0),'tag','view_field');% look for view_field |
---|
| 2092 | % if ~isempty(hview_field) |
---|
| 2093 | % delete(hview_field) |
---|
| 2094 | % end |
---|
| 2095 | % end |
---|
| 2096 | % |
---|
[860] | 2097 | |
---|
[1141] | 2098 | %'nomtype2pair': creates nomenclature for index pairs knowing the image nomenclature |
---|
[597] | 2099 | %--------------------------------------------------------------------- |
---|
[1020] | 2100 | function NomTypeNc=nomtype2pair(NomTypeIma,mode_selected) |
---|
[597] | 2101 | %--------------------------------------------------------------------- |
---|
| 2102 | % OUTPUT: |
---|
| 2103 | % NomTypeNc |
---|
| 2104 | %--------------------------------------------------------------------- |
---|
| 2105 | % INPUT: |
---|
| 2106 | % 'NomTypeIma': string defining the kind of nomenclature used for images |
---|
| 2107 | |
---|
| 2108 | NomTypeNc=NomTypeIma;%default |
---|
[1020] | 2109 | switch mode_selected |
---|
[597] | 2110 | case 'pair j1-j2' |
---|
| 2111 | if ~isempty(regexp(NomTypeIma,'a$')) |
---|
| 2112 | NomTypeNc=[NomTypeIma 'b']; |
---|
| 2113 | elseif ~isempty(regexp(NomTypeIma,'A$')) |
---|
| 2114 | NomTypeNc=[NomTypeIma 'B']; |
---|
| 2115 | else |
---|
| 2116 | r=regexp(NomTypeIma,'(?<num1>\d+)_(?<num2>\d+)$','names'); |
---|
| 2117 | if ~isempty(r) |
---|
| 2118 | NomTypeNc='_1_1-2'; |
---|
| 2119 | end |
---|
| 2120 | end |
---|
| 2121 | case 'series(Dj)' |
---|
| 2122 | % r=regexp(NomTypeIma,'(?<num1>\d+)_(?<num2>\d+)$','names'); |
---|
| 2123 | % if ~isempty(r) |
---|
| 2124 | NomTypeNc='_1_1-2'; |
---|
| 2125 | % end |
---|
| 2126 | case 'series(Di)' |
---|
| 2127 | r=regexp(NomTypeIma,'(?<num1>\d+)_(?<num2>\d+)$','names'); |
---|
| 2128 | if ~isempty(r) |
---|
| 2129 | NomTypeNc='_1-2_1'; |
---|
| 2130 | else |
---|
| 2131 | NomTypeNc='_1-2'; |
---|
| 2132 | end |
---|
| 2133 | end |
---|
| 2134 | |
---|
| 2135 | |
---|
[645] | 2136 | %------------------------------------------------------------------------ |
---|
| 2137 | % --- determine the list of index pairs of processing file |
---|
[1020] | 2138 | function [ind1,ind2,mode_selected]=... |
---|
[645] | 2139 | find_pair_indices(str_civ,i_series,j_series,MinIndex_i,MaxIndex_i,MinIndex_j,MaxIndex_j) |
---|
| 2140 | %------------------------------------------------------------------------ |
---|
| 2141 | ind1=''; |
---|
| 2142 | ind2=''; |
---|
| 2143 | r=regexp(str_civ,'^\D(?<ind>[i|j])=( -| )(?<num1>\d+)\|(?<num2>\d+)','names'); |
---|
| 2144 | if ~isempty(r) |
---|
[1020] | 2145 | mode_selected=['D' r.ind]; |
---|
[645] | 2146 | ind1=stra2num(r.num1); |
---|
| 2147 | ind2=stra2num(r.num2); |
---|
| 2148 | else |
---|
[1020] | 2149 | mode_selected='burst'; |
---|
[645] | 2150 | r=regexp(str_civ,'^j= (?<num1>[a-z])-(?<num2>[a-z])','names'); |
---|
| 2151 | if ~isempty(r) |
---|
| 2152 | NomTypeNc='_1ab'; |
---|
| 2153 | else |
---|
| 2154 | r=regexp(str_civ,'^j= (?<num1>[A-Z])-(?<num2>[A-Z])','names'); |
---|
| 2155 | if ~isempty(r) |
---|
| 2156 | NomTypeNc='_1AB'; |
---|
| 2157 | else |
---|
| 2158 | r=regexp(str_civ,'^j= (?<num1>\d+)-(?<num2>\d+)','names'); |
---|
| 2159 | if ~isempty(r) |
---|
| 2160 | NomTypeNc='_1_1-2'; |
---|
| 2161 | end |
---|
| 2162 | end |
---|
| 2163 | end |
---|
| 2164 | if isempty(r) |
---|
| 2165 | display('wrong pair mode input option') |
---|
| 2166 | else |
---|
| 2167 | ind1=stra2num(r.num1); |
---|
| 2168 | ind2=stra2num(r.num2); |
---|
| 2169 | end |
---|
| 2170 | end |
---|
[774] | 2171 | |
---|
| 2172 | %------------------------------------------------------------------------ |
---|
| 2173 | % --- fill civ_input with the parameters retrieved from an input Civ file |
---|
| 2174 | %------------------------------------------------------------------------ |
---|
| 2175 | function fill_civ_input(Data,handles) |
---|
| 2176 | |
---|
| 2177 | %% Civ param |
---|
| 2178 | % lists of parameters to enter |
---|
| 2179 | ListParamNum={'CorrBoxSize','SearchBoxSize','SearchBoxShift','Dx','Dy','Dz','MinIma','MaxIma'};% list of numerical values (to transform in strings) |
---|
| 2180 | ListParamValue={'CorrSmooth','CheckGrid','CheckMask','CheckThreshold'}; |
---|
| 2181 | ListParamString={'Grid','Mask'}; |
---|
| 2182 | % CorrSmooth ?? |
---|
| 2183 | option={'Civ1','Civ2'}; |
---|
| 2184 | for ichoice=1:2 |
---|
| 2185 | if isfield(Data,[option{ichoice} '_CorrBoxSize']) |
---|
| 2186 | fill_panel(Data,handles,option{ichoice},ListParamNum,ListParamValue,ListParamString) |
---|
| 2187 | end |
---|
| 2188 | end |
---|
| 2189 | |
---|
| 2190 | %% Fix param |
---|
| 2191 | option={'Fix1','Fix2'}; |
---|
| 2192 | for ichoice=1:2 |
---|
| 2193 | if isfield(Data,[option{ichoice} '_CheckFmin2']) |
---|
| 2194 | ListParamNum={'MinVel','MaxVel','MinCorr'};% list of numerical values (to transform in strings) |
---|
| 2195 | ListParamValue={'CheckFmin2','CheckF3','CheckF4'}; |
---|
| 2196 | ListParamString={'ref_fix_1'}; |
---|
| 2197 | fill_panel(Data,handles,option{ichoice},ListParamNum,ListParamValue,ListParamString) |
---|
| 2198 | end |
---|
| 2199 | end |
---|
| 2200 | |
---|
| 2201 | %% Patch param |
---|
| 2202 | option={'Patch1','Patch2'}; |
---|
| 2203 | for ichoice=1:2 |
---|
| 2204 | if isfield(Data,[option{ichoice} '_FieldSmooth']) |
---|
| 2205 | ListParamNum={'FieldSmooth','MaxDiff','SubDomainSize'};% list of numerical values (to transform in strings) |
---|
| 2206 | ListParamValue={}; |
---|
| 2207 | ListParamString={}; |
---|
| 2208 | fill_panel(Data,handles,option{ichoice},ListParamNum,ListParamValue,ListParamString) |
---|
| 2209 | end |
---|
| 2210 | end |
---|
| 2211 | %------------------------------------------------------------------------ |
---|
| 2212 | % --- fill a panel of civ_input with the parameters retrieved from an input Civ file |
---|
| 2213 | %------------------------------------------------------------------------ |
---|
| 2214 | function fill_panel(Data,handles,panel,ListParamNum,ListParamValue,ListParamString) |
---|
| 2215 | children=get(handles.(panel),'children');%handles of the children of the input GUI with handle 'GUI_handle' |
---|
| 2216 | handles_panel=[]; |
---|
| 2217 | for ichild=1:numel(children) |
---|
| 2218 | if ~isempty(get(children(ichild),'tag')) |
---|
| 2219 | handles_panel.(get(children(ichild),'tag'))=children(ichild); |
---|
| 2220 | end |
---|
| 2221 | end |
---|
| 2222 | for ilist=1:numel(ListParamNum) |
---|
| 2223 | ParamName=ListParamNum{ilist}; |
---|
| 2224 | CivParamName=[panel '_' ParamName]; |
---|
| 2225 | if isfield(Data,CivParamName) |
---|
| 2226 | for icoord=1:numel(Data.(CivParamName)) |
---|
| 2227 | if numel(Data.(CivParamName))>1 |
---|
| 2228 | Tag=['num_' ParamName '_' num2str(icoord)]; |
---|
| 2229 | else |
---|
| 2230 | Tag=['num_' ParamName]; |
---|
| 2231 | end |
---|
| 2232 | if isfield(handles_panel,Tag) |
---|
| 2233 | set(handles_panel.(Tag),'String',num2str(Data.(CivParamName)(icoord))) |
---|
| 2234 | set(handles_panel.(Tag),'Visible','on') |
---|
| 2235 | end |
---|
| 2236 | end |
---|
| 2237 | end |
---|
| 2238 | end |
---|
| 2239 | for ilist=1:numel(ListParamValue) |
---|
| 2240 | ParamName=ListParamValue{ilist}; |
---|
| 2241 | CivParamName=[panel '_' ParamName]; |
---|
| 2242 | if strcmp(ParamName,'CorrSmooth') |
---|
| 2243 | ParamName=['num_' ParamName]; |
---|
| 2244 | end |
---|
| 2245 | if isfield(Data,CivParamName) |
---|
| 2246 | if isfield(handles_panel,ParamName) |
---|
| 2247 | set(handles_panel.(ParamName),'Value',Data.(CivParamName)) |
---|
| 2248 | end |
---|
| 2249 | end |
---|
| 2250 | end |
---|
| 2251 | for ilist=1:numel(ListParamString) |
---|
| 2252 | ParamName=ListParamString{ilist}; |
---|
| 2253 | CivParamName=[panel '_' ParamName]; |
---|
| 2254 | if isfield(Data,CivParamName) |
---|
| 2255 | if isfield(handles_panel,ParamName) |
---|
| 2256 | set(handles_panel.(ParamName),'String',Data.(CivParamName)) |
---|
| 2257 | end |
---|
| 2258 | end |
---|
| 2259 | end |
---|
| 2260 | |
---|
| 2261 | %------------------------------------------------------------------------ |
---|
[856] | 2262 | % --- Executes on button press in ImportParam. |
---|
[851] | 2263 | %------------------------------------------------------------------------ |
---|
[856] | 2264 | function ImportParam_Callback(hObject, eventdata, handles) |
---|
[824] | 2265 | hseries=findobj(allchild(0),'Tag','series'); |
---|
| 2266 | hhseries=guidata(hseries); |
---|
| 2267 | InputTable=get(hhseries.InputTable,'Data');% read the input file(s) table in the GUI series |
---|
| 2268 | oldfile=InputTable{1,1}; |
---|
| 2269 | if isempty(oldfile) |
---|
| 2270 | % use a file name stored in prefdir |
---|
| 2271 | dir_perso=prefdir; |
---|
| 2272 | profil_perso=fullfile(dir_perso,'uvmat_perso.mat'); |
---|
| 2273 | if exist(profil_perso,'file') |
---|
| 2274 | h=load (profil_perso); |
---|
| 2275 | if isfield(h,'RootPath') && ischar(h.RootPath) |
---|
| 2276 | oldfile=h.RootPath; |
---|
| 2277 | end |
---|
| 2278 | end |
---|
| 2279 | end |
---|
| 2280 | filexml=uigetfile_uvmat('pick a xml parameter file for civ',oldfile,'.xml');% get the xml file containing processing parameters |
---|
| 2281 | %proceed only if a file has been introduced by the browser |
---|
| 2282 | if ~isempty(filexml) |
---|
| 2283 | Param=xml2struct(filexml);% read the input xml file as a Matlab structure |
---|
| 2284 | if ~isfield(Param,'InputTable')||~isfield(Param,'IndexRange') |
---|
| 2285 | msgbox_uvmat('ERROR','invalid config file: open a file in a folder ''/0_XML''') |
---|
| 2286 | return |
---|
| 2287 | end |
---|
| 2288 | check_input=0; |
---|
| 2289 | if isfield(Param,'ActionInput') |
---|
| 2290 | if isfield(Param.ActionInput,'Program')&& strcmp(Param.ActionInput.Program,'civ_series') |
---|
| 2291 | fill_GUI(Param.ActionInput,handles.civ_input)% fill the elements of the GUI series with the input parameters |
---|
[856] | 2292 | set(handles.ConfigSource,'String',filexml) |
---|
[824] | 2293 | check_input=1; |
---|
[856] | 2294 | update_CivOptions(handles,0) |
---|
[824] | 2295 | end |
---|
| 2296 | end |
---|
| 2297 | if ~check_input |
---|
| 2298 | msgbox_uvmat('ERROR','invalid config file (not for civ_series') |
---|
| 2299 | return |
---|
| 2300 | end |
---|
| 2301 | end |
---|
[849] | 2302 | |
---|
[1033] | 2303 | %------------------------------------------------------------------------ |
---|
[855] | 2304 | % --- Executes on selection change in CheckCiv3. |
---|
[1033] | 2305 | %------------------------------------------------------------------------ |
---|
[855] | 2306 | function CheckCiv3_Callback(hObject, eventdata, handles) |
---|
[860] | 2307 | |
---|
[1033] | 2308 | %------------------------------------------------------------------------ |
---|
[1020] | 2309 | % --- Executes on button press in CheckRefFile. |
---|
[1033] | 2310 | %------------------------------------------------------------------------ |
---|
[1020] | 2311 | function CheckRefFile_Callback(hObject, eventdata, handles) |
---|
[860] | 2312 | |
---|
[1033] | 2313 | hseries=findobj(allchild(0),'Tag','series'); |
---|
| 2314 | hhseries=guidata(hseries); |
---|
| 2315 | InputTable=get(hhseries.InputTable,'Data'); |
---|
| 2316 | i1=str2num(get(hhseries.num_first_i,'String')); |
---|
| 2317 | j1=str2num(get(hhseries.num_first_j,'String')); |
---|
| 2318 | InputFile=fullfile_uvmat(InputTable{1,1},InputTable{1,2},InputTable{1,3},InputTable{1,5},InputTable{1,4},i1,[],j1); |
---|
| 2319 | % browse for a reference file for displacement |
---|
| 2320 | fileref= uigetfile_uvmat('pick a reference image file:',InputFile); |
---|
| 2321 | if ~isempty(fileref) |
---|
| 2322 | FileInfo=get_file_info(fileref); |
---|
| 2323 | CheckImage=strcmp(FileInfo.FieldType,'image');% =1 for images |
---|
| 2324 | if ~CheckImage |
---|
| 2325 | msgbox_uvmat('ERROR',['invalid file type input for reference image: ' FileInfo.FileType ' not an image']) |
---|
| 2326 | else |
---|
| 2327 | if isfield (FileInfo,'NumberOfFrames')&& FileInfo.NumberOfFrames>1 |
---|
| 2328 | set(handles.num_OriginIndex,'Visible','on') |
---|
| 2329 | set(handles.OriginIndex_title,'Visible','on') |
---|
| 2330 | else |
---|
| 2331 | set(handles.num_OriginIndex,'Visible','off') |
---|
| 2332 | set(handles.OriginIndex_title,'Visible','off') |
---|
[1020] | 2333 | end |
---|
[1033] | 2334 | set(handles.RefFile,'String',fileref) |
---|
| 2335 | set(handles.ConfigSource,'String','NEW') |
---|
| 2336 | set(handles.ConfigSource,'BackgroundColor',[1 0 1]) |
---|
| 2337 | end |
---|
| 2338 | end |
---|
[1020] | 2339 | |
---|
[851] | 2340 | %------------------------------------------------------------------------ |
---|
| 2341 | % --- Executes on key press with selection of a uicontrol |
---|
| 2342 | %------------------------------------------------------------------------ |
---|
| 2343 | function keyboard_callback(hObject,eventdata,handles) |
---|
| 2344 | |
---|
| 2345 | ListExclude={'CheckCiv1','CheckFix1','CheckPatch1','CheckCiv2','CheckFix2','CheckPatch2','ref_i'}; |
---|
| 2346 | if isempty(find(strcmp(get(gco,'Tag'),ListExclude),1))% if the selected uicontrol is not in the Exclude list |
---|
| 2347 | set(handles.ConfigSource,'String','NEW')% indicate that the configuration is new |
---|
[856] | 2348 | set(handles.OK,'BackgroundColor',[1 0 1])% |
---|
| 2349 | drawnow |
---|
[851] | 2350 | end |
---|
[1148] | 2351 | |
---|
| 2352 | |
---|
| 2353 | function num_CorrBoxSize_3_Callback(hObject, eventdata, handles) |
---|
| 2354 | |
---|
| 2355 | |
---|
| 2356 | function num_SearchBoxSize_3_Callback(hObject, eventdata, handles) |
---|
| 2357 | |
---|
| 2358 | |
---|
| 2359 | function MinIndex_j_Callback(hObject, eventdata, handles) |
---|
| 2360 | |
---|
| 2361 | |
---|
| 2362 | % --- Executes on selection change in field_ref2. |
---|
| 2363 | function field_ref2_Callback(hObject, eventdata, handles) |
---|