1 | %'struct2nc_toolbox': create a netcdf file from a Matlab structure: use of netcdf toolbox |
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2 | %--------------------------------------------------------------------- |
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3 | % errormsg=struct2nc_toolbox(flname,Data) |
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4 | % |
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5 | %OUPUT: |
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6 | %errormsg=error message, =[]: default, no error |
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7 | % |
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8 | %INPUT: |
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9 | %flname: name of the netcdf file to create (must end with the extension '.nc') |
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10 | % Data: structure containing all the information of the netcdf file (or netcdf object) |
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11 | % with fields: |
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12 | % .ListGlobalAttribute: cell listing the names of the global attributes (note that a global atribute with the same name as a variable is excluded) |
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13 | % .Att_1,Att_2... : values of the global attributes |
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14 | % .ListDimName: cell listing the names of the array dimensions |
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15 | % .DimValue: array dimension values (Matlab vector with the same length as .ListDimName |
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16 | % .ListVarName: cell listing the names of the variables |
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17 | % .VarDimIndex: cell containing the set of dimension indices (in list .ListDimName) for each variable of .ListVarName |
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18 | % .VarAttribute: cell of structures s containing names and values of variable attributes (s.name=value) for each variable of .ListVarName |
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19 | % .Var1, .Var2....: variables (Matlab arrays) with names listed in .ListVarName |
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20 | % |
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21 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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22 | % Copyright Joel Sommeria, 2008, LEGI / CNRS-UJF-INPG, sommeria@coriolis-legi.org. |
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23 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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24 | % This file is part of the toolbox UVMAT. |
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25 | % |
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26 | % UVMAT is free software; you can redistribute it and/or modify |
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27 | % it under the terms of the GNU General Public License as published by |
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28 | % the Free Software Foundation; either version 2 of the License, or |
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29 | % (at your option) any later version. |
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30 | % |
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31 | % UVMAT is distributed in the hope that it will be useful, |
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32 | % but WITHOUT ANY WARRANTY; without even the implied warranty of |
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33 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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34 | % GNU General Public License (file UVMAT/COPYING.txt) for more details. |
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35 | %AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
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36 | |
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37 | function errormsg=struct2nc_toolbox(flname,Data) |
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38 | |
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39 | FilePath=fileparts(flname); |
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40 | if ~strcmp(FilePath,'') &&~exist(FilePath,'dir') |
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41 | errormsg=['directory ' FilePath ' needs to be created']; |
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42 | return |
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43 | end |
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44 | [Data,errormsg]=check_field_structure(Data); |
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45 | if ~isempty(errormsg) |
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46 | return |
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47 | end |
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48 | ListVarName=Data.ListVarName; |
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49 | nc=netcdf(flname,'clobber'); %create the netcdf file with name flname |
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50 | %write global constants |
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51 | if isfield(Data,'ListGlobalAttribute') |
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52 | keys=Data.ListGlobalAttribute; |
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53 | for iattr=1:length(keys) |
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54 | if isfield(Data,keys{iattr}) |
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55 | testvar=0; |
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56 | for ivar=1:length(ListVarName)% eliminate possible global attributes with the same name as a variable |
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57 | if isequal(ListVarName{ivar}, keys{iattr}) |
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58 | testvar=1; |
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59 | break |
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60 | end |
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61 | end |
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62 | if ~testvar |
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63 | eval(['cte=Data.' keys{iattr} ';']) |
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64 | if ischar(cte) && ~isequal(cte,'') |
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65 | eval(['nc.' keys{iattr} '=''' cte ''';']); |
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66 | elseif isnumeric(cte)&& ~isempty(cte) |
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67 | eval(['nc.' keys{iattr} '= cte; ']); |
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68 | else |
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69 | errormsg='global attributes must be characters or numbers'; |
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70 | return |
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71 | end |
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72 | end |
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73 | end |
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74 | end |
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75 | end |
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76 | for idim=1:length(Data.ListDimName) |
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77 | nc(Data.ListDimName{idim})=Data.DimValue(idim);%create dimensions |
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78 | end |
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79 | |
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80 | VarAttribute={}; %default |
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81 | testattr=0; |
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82 | if isfield(Data,'VarAttribute') |
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83 | VarAttribute=Data.VarAttribute; |
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84 | testattr=1; |
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85 | end |
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86 | for ivar=1:length(ListVarName) |
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87 | if isfield(Data,ListVarName{ivar}) |
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88 | eval(['VarVal=Data.' ListVarName{ivar} ';'])%varval=values of the current variable |
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89 | siz=size(VarVal); |
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90 | VarDimIndex=Data.VarDimIndex{ivar}; %indices of the variable dimensions in the list of dimensions |
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91 | VarDimName=Data.VarDimName{ivar}; |
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92 | if ischar(VarDimName) |
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93 | VarDimName={VarDimName}; |
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94 | end |
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95 | testrange=(numel(VarDimName)==1 && strcmp(VarDimName{1},ListVarName{ivar}) && numel(VarVal)==2); |
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96 | testline=isequal(length(siz),2) & isequal(siz(1),1)& isequal(siz(2), Data.DimValue(VarDimIndex)); |
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97 | testcolumn=isequal(length(siz),2) & isequal(siz(1), Data.DimValue(VarDimIndex))& isequal(siz(2),1); |
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98 | if ~testrange && ~testline && ~testcolumn && ~isequal(siz,Data.DimValue(VarDimIndex)) |
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99 | errormsg=['wrong dimensions declared for ' ListVarName{ivar} ' in struct2nc.m']; |
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100 | break |
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101 | end |
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102 | if testline || testrange |
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103 | dimname=Data.ListDimName{VarDimIndex}; |
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104 | if testrange |
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105 | VarVal=linspace(VarVal(1),VarVal(2),Data.DimValue(VarDimIndex)); |
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106 | end |
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107 | nc{ListVarName{ivar}}=ncfloat(dimname);%vector of x coordinates |
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108 | nc{ListVarName{ivar}}(:) = VarVal'; |
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109 | else |
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110 | nc{ListVarName{ivar}}=ncfloat(Data.ListDimName(VarDimIndex));%vector of x coordinates |
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111 | nc{ListVarName{ivar}}(:) = VarVal; |
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112 | end |
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113 | end |
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114 | end |
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115 | %write variable attributes |
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116 | if testattr |
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117 | for ivar=1:min(numel(VarAttribute),numel(ListVarName)) %loop on the attributes of variable ivar |
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118 | if isstruct(VarAttribute{ivar}) |
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119 | attr_names=fields(VarAttribute{ivar}); |
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120 | for iattr=1:length(attr_names) |
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121 | eval(['attr_val=VarAttribute{ivar}.' attr_names{iattr} ';']); |
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122 | if ischar(attr_val) && ~isequal(attr_val,'') |
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123 | eval(['nc{''' ListVarName{ivar} '''}.' attr_names{iattr} '=''' attr_val ''';']) |
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124 | elseif isnumeric(attr_val)&& ~isempty(attr_val) |
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125 | eval(['nc{''' ListVarName{ivar} '''}.' attr_names{iattr} '=attr_val ;']) |
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126 | end |
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127 | end |
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128 | end |
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129 | end |
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130 | end |
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131 | |
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132 | |
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133 | close(nc); |
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