Changeset 1007

Timestamp:

Jul 3, 2017, 9:55:48 PM (7 years ago)

Author:

sommeria

Message:

functions to read DaVis? images added

Location:

trunk/src

Files:

• get_file_info.m (modified) (2 diffs)
• read_field.m (modified) (1 diff)
• read_image.m (modified) (1 diff)
• readimx.mexa64 (added)
• readimx.mexw64 (added)
• series/civ_input.m (modified) (1 diff)
• series/civ_series.m (modified) (1 diff)

trunk/src/get_file_info.m

@@ -56 +56 @@
 %         FileInfo.NumberOfFrame=24000;
 %         %%%%%%%%
+    case '.im7'
+        try
+             Input=readimx(fileinput);
+             Image=Input.Frames{1}.Components{1}.Planes{1};
+             FileInfo.FileType='image_DaVis';
+             FileInfo.NumberOfFrames=numel(Input.Frames);
+             FileInfo.Height=size(Image,2);
+             FileInfo.Width=size(Image,1);
+        catch ME
+            msgbox_uvmat('ERROR',ME.message)
+            return
+        end
     case '.h5'
         hinfo=hdf5info(fileinput);
@@ -146 +158 @@
 end
 switch FileInfo.FileType
-    case {'image','multimage','mmreader','cine_phantom','video','netcdf','civdata'}
+    case {'image','image_DaVis','multimage','mmreader','cine_phantom','video','netcdf','civdata'}
         FileInfo.FileIndexing='on'; % allow to detect file index for scanning series
 end

trunk/src/read_field.m

@@ -270 +270 @@
     case 'rdvision'
         [A,FileInfo,timestamps]=read_rdvision(FileName,num);
+    case 'image_DaVis'
+        Input=readimx(FileName);
+        A=Input.Frames{num}.Components{1}.Planes{1}';
     case 'cine_phantom'
         [A,FileInfo] = read_cine_phantom(FileName,num );

trunk/src/read_image.m

@@ -66 +66 @@
     case 'image'
         A=imread(FileName);
+    case 'image_DaVis'
+                Input=readimx(FileName);
+        A=Input.Frames{num}.Components{1}.Planes{1}';
 end

trunk/src/series/civ_input.m

@@ -111 +111 @@
 iview_image=1;%line # for the input images
 switch FileType
-    case {'image','multimage','video','mmreader','cine_phantom','netcdf'}
+    case {'image','image_DaVis','multimage','video','mmreader','cine_phantom','netcdf'}
 %         NomTypeImaA=NomTypeInput;
 %         iview_image=1;%line # for the input images

trunk/src/series/civ_series.m

@@ -224 +224 @@
     
     %% check the first image pair
-%     try
         if Param.ActionInput.CheckCiv1% Civ1 is performed
-%             ImageName_A=fullfile_uvmat(RootPath_A,SubDir_A,RootFile_A,FileExt_A,NomType_A,i1_series_Civ1(1),[],j1_series_Civ1(1));
-%             [FileInfo_A,VideoObject_A]=get_file_info(ImageName_A);
-%             FileType_A=FileInfo_A.FileType;
-%             if strcmp(FileInfo_A.FileType,'netcdf')
-%                 FieldName_A=Param.InputFields.FieldName;
-%                 [DataIn,tild,tild,errormsg]=nc2struct(ImageName_A,{FieldName_A});
-%                 par_civ1.ImageA=DataIn.(FieldName_A);
-%             else
-%                 [par_civ1.ImageA,VideoObject_A] = read_image(ImageName_A,FileType_A,VideoObject_A,FrameIndex_A_Civ1(1));
-%             end
-%             ImageName_B=fullfile_uvmat(RootPath_B,SubDir_B,RootFile_B,FileExt_B,NomType_B,i2_series_Civ1(1),[],j2_series_Civ1(1));
-%             if ~exist(ImageName_B,'file')
-%                 disp_uvmat('ERROR',['first input image ' ImageName_B ' does not exist'],checkrun)
-%                 return
-%             end
-%             [FileInfo_B,VideoObject_B]=get_file_info(ImageName_B);
-%             FileType_B=FileInfo_B.FileType;
-%             if strcmp(FileInfo_B.FileType,'netcdf')
-%                 FieldName_B=Param.InputFields.FieldName;
-%                 [DataIn,tild,tild,errormsg]=nc2struct(ImageName_B,{FieldName_B});
-%                 par_civ1.ImageB=DataIn.(FieldName_B);
-%             else
-%                 [par_civ1.ImageB,VideoObject_B] = read_image(ImageName_B,FileType_B,VideoObject_B,FrameIndex_B_Civ1(1));
-%             end
             NbField=numel(i1_series_Civ1);
         elseif Param.ActionInput.CheckCiv2 % Civ2 is performed without Civ1
-%             ImageName_A=fullfile_uvmat(RootPath_A,SubDir_A,RootFile_A,FileExt_A,NomType_A,i1_series_Civ2(1),[],j1_series_Civ2(1));
-%             if ~exist(ImageName_A,'file')
-%                 disp_uvmat('ERROR',['first input image ' ImageName_A ' does not exist'],checkrun)
-%                 return
-%             end
-%             [FileInfo_A,VideoObject_A]=get_file_info(ImageName_A);
-%             FileType_A=FileInfo_A.FileType;
-%             [par_civ1.ImageA,VideoObject_A] = read_image(ImageName_A,FileInfo_A.FileType,VideoObject_A,FrameIndex_A_Civ2(1));
-%             ImageName_B=fullfile_uvmat(RootPath_B,SubDir_B,RootFile_B,FileExt_B,NomType_B,i2_series_Civ2(1),[],j2_series_Civ2(1));
-%             if ~exist(ImageName_B,'file')
-%                 disp_uvmat('ERROR',['first input image ' ImageName_B ' does not exist'],checkrun)
-%                 return
-%             end
-%             [FileInfo_B,VideoObject_B]=get_file_info(ImageName_B);
-%             FileType_B=FileInfo_B.FileType;
-%             [par_civ1.ImageB,VideoObject_B] = read_image(ImageName_B,FileType_B,VideoObject_B,FrameIndex_B_Civ2(1));
+
             NbField=numel(i1_series_Civ2);
         else
             NbField=numel(i1_series_Civ1);% no image used (only fix or patch) TO CHECK
         end
-%     catch ME
-%         if ~isempty(ME.message)
-%             disp_uvmat('ERROR', ['error reading input image: ' ME.message],checkrun)
-%             return
-%         end
-%     end
+