Changeset 1129 for trunk/src/series/extract_multitif.m

Timestamp:

Mar 1, 2024, 8:09:20 PM (2 months ago)

Author:

sommeria

Message:

LIF calibration update and extrct_multitif

File:

• trunk/src/series/extract_multitif.m (modified) (1 diff)

trunk/src/series/extract_multitif.m

@@ -1 +1 @@
 %'extract_multitif': read image series from PCO cameras (tiff image series) and write .png images
-%------------------------------------------------------------------------
-    
+% use a single geometric calibration, with information on the slice positions in case of 3D scanning
+%------------------------------------------------------
+% the output file indexing is based on the xml file requested by the
+% function when it is selected (or possibly inserted in this function in the section TEST)
+%  This xml file must contain the following information:
+%   NbDti: the number of 'bursts' -1
+%   NbDtj: number of frames in each burst-1, or number of repetition of a burst sequence defined by Dtj
+%   NbDtk: number of repetitions of a slice scanning process -1 (ignored by default)
+% Therefore the total number of frames is  (NbDti+1)*(NbDtj+1)*(NbDtk+1)
+% The frame series is stored in a single folder with two indices i:(NbDti+1)*(NbDtk+1) 
+%
+% To run the function in the cluster in parallel for each multitif file, indicate nb-slice_i equal to the
+% number input multitif files
+
+
 % function ParamOut=extract_multitif(Param)
 %