Ignore:
Timestamp:
Mar 1, 2024, 8:09:20 PM (3 months ago)
Author:
sommeria
Message:

LIF calibration update and extrct_multitif

File:
1 edited

Legend:

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  • trunk/src/series/extract_multitif.m

    r1127 r1129  
    11%'extract_multitif': read image series from PCO cameras (tiff image series) and write .png images
    2 %------------------------------------------------------------------------
    3    
     2% use a single geometric calibration, with information on the slice positions in case of 3D scanning
     3%------------------------------------------------------
     4% the output file indexing is based on the xml file requested by the
     5% function when it is selected (or possibly inserted in this function in the section TEST)
     6%  This xml file must contain the following information:
     7%   NbDti: the number of 'bursts' -1
     8%   NbDtj: number of frames in each burst-1, or number of repetition of a burst sequence defined by Dtj
     9%   NbDtk: number of repetitions of a slice scanning process -1 (ignored by default)
     10% Therefore the total number of frames is  (NbDti+1)*(NbDtj+1)*(NbDtk+1)
     11% The frame series is stored in a single folder with two indices i:(NbDti+1)*(NbDtk+1)
     12%
     13% To run the function in the cluster in parallel for each multitif file, indicate nb-slice_i equal to the
     14% number input multitif files
     15
     16
    417% function ParamOut=extract_multitif(Param)
    518%
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