Changeset 128 for trunk/src/struct2nc.m

Timestamp:

Nov 21, 2010, 10:06:11 PM (13 years ago)

Author:

sommeria

Message:

series: give writting access to the group for all subdirectories produced
uvmat.fig: change of vect and scalar frames (to be consistent with view_field)
uvmat: various cleaning
plot_field: various cleaning to improve axes definition and avoid blinking
geometry_calib: improved dispay of point coordiantes, improved link with dataview for REPLICATE.
struct2nc: repair bug , file was not closed.
cell2tab: cleaning
dataview: improve the browser
civ: solve pb of image naming

File:

• trunk/src/struct2nc.m (modified) (6 diffs)

trunk/src/struct2nc.m

@@ -42 +42 @@
     return
 end 
-hhh=which('netcdf.create');% look for built-in matlab library
+hhh=which('netcdf.create');% look for built-in matlab netcdf library
 
-%USE OF built-in  netcdf library
+%USE OF built-in matlab netcdf library
 if ~isequal(hhh,'')
     FilePath=fileparts(flname);
@@ -68 +68 @@
                 if ~testvar               
                     eval(['cte=Data.' keys{iattr} ';'])
-                    if (ischar(cte) ||isnumeric(cte)) &&  ~isempty(cte)&& ~isequal(cte,'')
+                    if (ischar(cte) ||isnumeric(cte)) &&  ~isempty(cte)%&& ~isequal(cte,'')
+                        %write constant only if it is numeric or char string, and not empty
                         netcdf.putAtt(nc,netcdf.getConstant('NC_GLOBAL'),keys{iattr},cte)
-                    else
-                        errormsg='global attributes must be characters or numbers';
-                        return
                     end
                 end
@@ -79 +77 @@
     end
     %create dimensions
-    dimid=[];
+    dimid=zeros(1,length(Data.ListDimName));
     for idim=1:length(Data.ListDimName)
-         dimid(idim) = netcdf.defDim(nc,Data.ListDimName{idim},Data.DimValue(idim)); 
+         dimid(idim) = netcdf.defDim(nc,Data.ListDimName{idim},Data.DimValue(idim));
     end
     VarAttribute={}; %default
@@ -89 +87 @@
         testattr=1;
     end
-    varid=[];
+    varid=zeros(1,length(Data.ListVarName));
     for ivar=1:length(ListVarName)
-        varid(ivar)=netcdf.defVar(nc,ListVarName{ivar},'double',dimid(Data.VarDimIndex{ivar}));%define variable  
+        varid(ivar)=netcdf.defVar(nc,ListVarName{ivar},'nc_double',dimid(Data.VarDimIndex{ivar}));%define variable  
     end
      %write variable attributes
@@ -117 +115 @@
                 VarDimName={VarDimName};
             end
-            testrange=(numel(VarDimName)==1 && strcmp(VarDimName{1},ListVarName{ivar}) && numel(VarVal)==2);
-            testline=isequal(length(siz),2) && isequal(siz(1),1)&& isequal(siz(2), Data.DimValue(VarDimIndex));
-            testcolumn=isequal(length(siz),2) && isequal(siz(1), Data.DimValue(VarDimIndex))&& isequal(siz(2),1);
+            testrange=(numel(VarDimName)==1 && strcmp(VarDimName{1},ListVarName{ivar}) && numel(VarVal)==2);% case of a coordinate defined on a regular mesh by the first and last values.
+            testline=isequal(length(siz),2) && isequal(siz(1),1)&& isequal(siz(2), Data.DimValue(VarDimIndex));%matlab vector
+            testcolumn=isequal(length(siz),2) && isequal(siz(1), Data.DimValue(VarDimIndex))&& isequal(siz(2),1);%matlab column vector
             if ~testrange && ~testline && ~testcolumn && ~isequal(siz,Data.DimValue(VarDimIndex))
                 errormsg=['wrong dimensions declared for ' ListVarName{ivar} ' in struct2nc.m'];
@@ -126 +124 @@
             if testline || testrange
                 if testrange
-                    VarVal=linspace(VarVal(1),VarVal(2),Data.DimValue(VarDimIndex));
+                    VarVal=linspace(VarVal(1),VarVal(2),Data.DimValue(VarDimIndex));% restitute the whole array of coordinate values
                 end
-               %nc{ListVarName{ivar}}=ncfloat(Data.ListDimName(VarDimIndex));%vector of x coordinates
-               netcdf.putVar(nc,varid(ivar), double(VarVal'));
+                netcdf.putVar(nc,varid(ivar), double(VarVal'));
             else
                 netcdf.putVar(nc,varid(ivar), double(VarVal));
-                %nc{ListVarName{ivar}}(:) = VarVal;
-            end
-            
+            end      
         end
     end
+    netcdf.close(nc)
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 %OLD netcdf toolbox