Changeset 308 for trunk/src/civ.m

Timestamp:

Nov 30, 2011, 4:19:19 PM (13 years ago)

Author:

gostiaux

Message:

batch for LEGI debugging

File:

• trunk/src/civ.m (modified) (1 diff)

trunk/src/civ.m

@@ -2073 +2073 @@
                 end
                 fclose(fid)
-                
-                
+                text_oarscript=[...
+                    '#!/bin/bash \n'...
+                    '#OAR -n Mylauncher \n'...
+                    '#OAR -l node=4/core=5,walltime=0:15:00 \n'...
+                    '#OAR -E stderrfile.log \n'...
+                    '#OAR -O stdoutfile.log \n'...
+                    '# ========================================================= \n'...
+                    '# This simple program launch a multinode parallel OpenMPI mpilauncher \n'...
+                    '# application for coriolis PIV post-processing. \n'...
+                    '# OAR uses oarshmost wrapper to propagate the user environement. \n'...
+                    '# This wrapper assert that the user has the same environment on all the \n'...
+                    '# allocated nodes (basic behavior needed by most MPI applications).  \n'...
+                    '# \n'...
+                    '# REQUIREMENT: \n'...
+                    '# the oarshmost wrapper should be installed in $HOME/bin directory. \n'...
+                    '# If a different location is used, change the line following the comment "Bidouille" \n'...
+                    '# ========================================================= \n'...
+                    '#   USER should only modify these 2 lines  \n'...
+                    'WORKDIR=/home/users/gostiaux/tmp/begou \n'...
+                    'COMMANDE="/home/users/gostiaux/tmp/begou/mpilauncher  -f ' filename_joblist '" \n'...
+                    '# ========================================================= \n'...
+                    '# DO NOT MODIFY the FOLOWING LINES. (or be carefull) \n'...
+                    'echo "job starting on: "`hostname` \n'...
+                    'MPINODES="-host `tr [\\\\\\n] [,] <$OAR_NODEFILE |sed -e "s/,$/ /"`" \n'...
+                    'NCPUS=`cat $OAR_NODEFILE |wc -l` \n'...
+                    '#========== Bidouille ============== \n'...
+                    'export OMPI_MCA_plm_rsh_agent=$HOME/tmp/begou/oarshmost \n'...
+                    'cd $WORKDIR \n'...
+                    'CMD="mpirun -np $NCPUS  -wdir $WORKDIR $MPINODES $COMMANDE" \n'...
+                    'echo "I run: $CMD"  \n'...
+                    '$CMD \n'...
+                    'echo "job ending" \n'...
+                    ];
 %                 oarsub -S ./oar.sub 
+                filename_oarscript=fullfile(Rootbat,'oar_command');
+                fid=fopen(filename_oarscript,'w');
+                fprintf(fid,[text_oarscript]);
+                fclose(fid);
+                eval(['!chmod +x  ' filename_oarscript]);
+                eval(['!oarsub -S ' filename_oarscript]);