Changeset 348 for trunk/src/series/ima_levels_batch.m

Timestamp:

Dec 23, 2011, 3:35:53 PM (13 years ago)

Author:

gostiaux

Message:

Now launches jobs using oar-parexec

File:

• trunk/src/series/ima_levels_batch.m (modified) (3 diffs)

trunk/src/series/ima_levels_batch.m

@@ -33 +33 @@
 cd(path);
 mkdir([subdir_ima '_levels']);
-  [xx,msg2] = fileattrib(subdir_ima,'+w','g'); %yield writing access (+w) to user group (g)
+  [xx,msg2] = fileattrib([subdir_ima '_levels'],'+w','g'); %yield writing access (+w) to user group (g)
 if ~strcmp(msg2,'')
     msgbox_uvmat('ERROR',['pb of permission for ' subdir_ima ': ' msg2])%error message for directory creation
@@ -88 +88 @@
 ncores=1;
 walltime_onejob=10;%seconds
-filename_joblist=fullfile(Rootbat,'job_list.txt');
-fid=fopen(filename_joblist,'w');
+filename_joblist=fullfile(path,[subdir_ima '_levels'],'job_list.txt')
+fid=fopen(filename_joblist,'w+')
 for p=1:length(batch_file_list)
     fprintf(fid,[batch_file_list{p} '\n']);
 end
-fclose(fid)
-oar_command=['oarsub -n test '...
+fclose(fid);
+oar_command=['oarsub -n ima_levels '...
     '-l /core=' num2str(ncores) ','...
     'walltime=' datestr(1.05*walltime_onejob/86400*max(length(batch_file_list),ncores)/ncores,13) ' '...
@@ -100 +100 @@
     '-O ' regexprep(filename_joblist,'\.txt\>','.log') ' '...
     '"oar-parexec -f ' filename_joblist ' -l ' filename_joblist '.log"'];
-filename_oarcommand=fullfile(Rootbat,'oar_command');
+filename_oarcommand=fullfile(path,[subdir_ima '_levels'],'oar_command');
 fid=fopen(filename_oarcommand,'w');
 fprintf(fid,[oar_command '\n']);