Changeset 599 for trunk/src/series/sub_background.m

Timestamp:

Apr 3, 2013, 10:21:53 AM (11 years ago)

Author:

sommeria

Message:

various bug corrections. Steps further for civ_series (still development needed)

File:

• trunk/src/series/sub_background.m (modified) (7 diffs)

trunk/src/series/sub_background.m

@@ -171 +171 @@
         nbaver_ima=nbaver*step;
     end
-    ParamOut.InputGUI.CheckVolume=strcmp(answer{1},'Yes');
-    ParamOut.InputGUI.SlidingSequenceLength=nbaver_ima;
-    ParamOut.InputGUI.BrightnessRankThreshold=str2num(answer{3});
+    ParamOut.ActionInput.CheckVolume=strcmp(answer{1},'Yes');
+    ParamOut.ActionInput.SlidingSequenceLength=nbaver_ima;
+    ParamOut.ActionInput.BrightnessRankThreshold=str2num(answer{3});
     
     % apply the image rescaling function 'level' (avoid the blinking effects of bright particles)
     answer=msgbox_uvmat('INPUT_Y-N','apply image rescaling function levels.m after sub_background');
-    ParamOut.InputGUI.CheckLevelTransform=strcmp(answer,'Yes');
+    ParamOut.ActionInput.CheckLevelTransform=strcmp(answer,'Yes');
     return
 end
@@ -190 +190 @@
 
 %% Input preparation
-nbaver_ima=Param.InputGUI.SlidingSequenceLength;
+nbaver_ima=Param.ActionInput.SlidingSequenceLength;
 NbSlice=Param.IndexRange.NbSlice;
 if ~isequal(NbSlice,1)
@@ -225 +225 @@
 OutputDir=[Param.OutputSubDir Param.OutputDirExt];
 
-if isequal(Param.InputGUI.CheckVolume,1)
+if isequal(Param.ActionInput.CheckVolume,1)
     step=1;
 else
     step=nbfield_j;%case of bursts: the sliding background is shifted by the length of one burst
 end
-nbaver_ima=Param.InputGUI.SlidingSequenceLength;%number of images for the sliding background
+nbaver_ima=Param.ActionInput.SlidingSequenceLength;%number of images for the sliding background
 nbaver=ceil(nbaver_ima/step);%number of bursts for the sliding background
 if isequal(floor(nbaver/2),nbaver)
@@ -242 +242 @@
 
 % calculate absolute brightness rank
-rank=floor(Param.InputGUI.BrightnessRankThreshold*nbaver_ima);
+rank=floor(Param.ActionInput.BrightnessRankThreshold*nbaver_ima);
 if rank==0
     rank=1;%rank selected in the sorted image series
@@ -346 +346 @@
         
         %write result file
-        if Param.InputGUI.CheckLevelTransform
+        if Param.ActionInput.CheckLevelTransform
             C=levels(Acor);
             imwrite(C,newname,'BitDepth',8); % save the new image
@@ -395 +395 @@
                     newname=fullfile_uvmat(RootPath{1},OutputDir,RootFile{1},FileExtOut,NomTypeOut,i1_series{1}(ifile),[],j1);
                     %write result file
-                    if Param.InputGUI.CheckLevelTransform
+                    if Param.ActionInput.CheckLevelTransform
                         C=levels(Acor);
                         imwrite(C,newname,'BitDepth',8); % save the new image
@@ -430 +430 @@
         
         %write result file
-        if Param.InputGUI.CheckLevelTransform
+        if Param.ActionInput.CheckLevelTransform
             C=levels(Acor);
             imwrite(C,newname,'BitDepth',8); % save the new image