Changeset 72 for trunk/src/series

Timestamp:

Mar 30, 2010, 11:03:42 AM (15 years ago)

Author:

sommeria

Message:

ima2vol: write image volumes in 16 bits (test for civ_3D)
plot-text removed: put as a sub-function of plot_field
uvmat: movie stops in case of error in reding files
bug fixes for reading 3D vel fields

File:

• trunk/src/series/ima2vol.m (modified) (5 diffs)

trunk/src/series/ima2vol.m

@@ -20 +20 @@
 curdir=pwd;
 cd(path);
-mkdir([subdir_ima '_ij']);
+mkdir([subdir_ima '_vol']);
 cd(curdir);
-basename_new=fullfile(path,[subdir_ima '_ij'],namebase);
+basename_new=fullfile(path,[subdir_ima '_vol'],namebase);
 
 % read imadoc
@@ -55 +55 @@
         t=set(t,uid_value(1),'value',ImageName)%indicate  name of the first image, with ;png extension
     end  
-
-%     %add information about image transform
-%     [t,new_uid]=add(t,1,'element','ImageTransform');
-%     [t,NameFunction_uid]=add(t,new_uid,'element','NameFunction');
-%     [t]=add(t,NameFunction_uid,'chardata','sub_background');      
-%     [t,NbSlice_uid]=add(t,new_uid,'element','NbSlice');
-%     [t]=add(t,new_uid,'chardata',num2str(nbslice_i));
-%     [t,NbSlidingImages_uid]=add(t,new_uid,'element','NbSlidingImages');
-%     [t]=add(t,NbSlidingImages_uid,'chardata',num2str(nbaver));
-%     [t,LuminosityRank_uid]=add(t,new_uid,'element','RankBackground');
-%     [t]=add(t,LuminosityRank_uid,'chardata',num2str(rank));% luminosity rank almong the nbaver sliding images 
     save(t,[basename_new '.xml'])
 end
@@ -83 +72 @@
     if num_j==nbfield2
          filename_new=name_generator(basename_new,num_i,1,'.vol','_i');
-         imwrite(vol,filename_new,'png')
+         imwrite(vol,filename_new,'png','BitDepth',16)% WRITE IN 16 bits
          vol=[];
     end      
@@ -104 +93 @@
 Mfiltre=Mfiltre/(sum(sum(Mfiltre)));
 
-C=filter2(ones(windowsize)/windowsize^2,B);
+C=filter2(Mfiltre,B);
 C(:,1:windowsize)=C(:,windowsize)*ones(1,windowsize);
 C(:,end-windowsize+1:end)=C(:,end-windowsize+1)*ones(1,windowsize);
@@ -127 +116 @@
 cmax=max(c_select);
 C=(C-cmin)/(cmax-cmin)*256;
-C=uint8(C);
+%C=uint8(C);